PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000668G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 275aa    MW: 28841.6 Da    PI: 5.1995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000668G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19105155155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PH01000668G0350 105 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 155
                      57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-13105155IPR001471AP2/ERF domain
CDDcd000182.07E-30105164No hitNo description
SMARTSM003805.0E-37106169IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-22106164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-32106164IPR001471AP2/ERF domain
PROSITE profilePS5103224.118106163IPR001471AP2/ERF domain
PRINTSPR003676.2E-11107118IPR001471AP2/ERF domain
PRINTSPR003676.2E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEADASHAPT TSSSSSSSSL LSTSSSFSSL VNAAQELSKN SKAPKHPQKR KRAASPVTDQ  60
EPETAATDGQ GEESSSCSTE DNAASGKAQA SAGAGAASRS GFKHPSYRGV RRRSWGKWVS  120
EIREPRKKSR IWLGTFPTAE MAARAHDVAA LAIKGRAAHL NFPDRAHELP RPASTSPADI  180
QAAAAKAAAE VQCEASSFPA AESPSSPAAE SPEAACPETM QADGGQDNVL FDLPDLLLDL  240
RDGLWWSPVW PVARAAEEYD GGDFGLNEPL LWAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1989163372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000668G0350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2601180.0KT260118.1 Phyllostachys edulis DREB1A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635762.14e-85ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ73e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0M5KTY40.0A0A0M5KTY4_9POAL; DREB1A
STRINGOPUNC04G18500.14e-99(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Wu H, et al.
    Genome-Wide Analysis of the AP2/ERF Transcription Factors Family and the Expression Patterns of DREB Genes in Moso Bamboo (Phyllostachys edulis).
    PLoS ONE, 2015. 10(5): p. e0126657
    [PMID:25985202]