PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000667G0650

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 317aa MW: 34047.1 Da PI: 5.3842

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000667G0650	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.8	1.3e-50	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF+Ptd+e++v+yLk+k++++ + ++++i++vdiyk++PwdLp k+ +e+ew+fFs+rd+ky++g r+nr++ sg Wkatg+dk++l+ PH01000667G0650 11 LPPGFRFQPTDQEIIVYYLKNKIAATATAVTSIIADVDIYKFDPWDLPDKAIFGEEEWFFFSPRDRKYPNGARPNRTAGSGHWKATGTDKPILA 104 79***********************999999***********7766789*********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + g+kk Lvfy+gr+p+g+kt+Wvmheyrl PH01000667G0650 105 AgGAHCLGVKKGLVFYQGRSPRGTKTEWVMHEYRL 139 9555669************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-60	6	168	IPR003441	NAC domain
PROSITE profile	PS51005	59.603	11	168	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEGFVFRGCQ LPPGFRFQPT DQEIIVYYLK NKIAATATAV TSIIADVDIY KFDPWDLPDK 60 AIFGEEEWFF FSPRDRKYPN GARPNRTAGS GHWKATGTDK PILAAGGAHC LGVKKGLVFY 120 QGRSPRGTKT EWVMHEYRLL DSDAAVAHHK PNDSMRLDDW VLCRVRKKGV AFAPETDDTS 180 EAPSHAAAPA TDYHAGKEGE AAPWEVQVPN AACDSLGDDL TDGQLLQYLV GSGSGQDADG 240 AIGGAASAGG HQGCGESAPH ALVSVLETIK RNLSFQAIDD MYLLQPASKR ANCMRGAGDD 300 EPGALPGDVV LDIRGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-65	11	168	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-65	11	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-65	11	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-65	11	168	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-65	11	168	20	168	NAC domain-containing protein 19
3swm_B	2e-65	11	168	20	168	NAC domain-containing protein 19
3swm_C	2e-65	11	168	20	168	NAC domain-containing protein 19
3swm_D	2e-65	11	168	20	168	NAC domain-containing protein 19
3swp_A	2e-65	11	168	20	168	NAC domain-containing protein 19
3swp_B	2e-65	11	168	20	168	NAC domain-containing protein 19
3swp_C	2e-65	11	168	20	168	NAC domain-containing protein 19
3swp_D	2e-65	11	168	20	168	NAC domain-containing protein 19
4dul_A	2e-65	11	168	17	165	NAC domain-containing protein 19
4dul_B	2e-65	11	168	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000667G0650

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	3e-92	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200711.1	1e-134	NAC transcription factor 32-like
Swissprot	A0SPJ6	2e-72	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	A0SPJ9	2e-72	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A077RZD5	1e-140	A0A077RZD5_WHEAT; Uncharacterized protein
STRING	EMT29965	1e-136	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	9e-67	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]