PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000667G0080

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Nin-like

Protein Properties

Length: 950aa MW: 103258 Da PI: 6.0957

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000667G0080	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.3e-29	602	653	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PH01000667G0080 602 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 653 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	592	673	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	605	653	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.55E-20	845	940	No hit	No description
SMART	SM00666	6.6E-23	855	937	IPR000270	PB1 domain
Pfam	PF00564	7.8E-15	855	936	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-24	855	936	No hit	No description
PROSITE profile	PS51745	18.061	855	937	IPR000270	PB1 domain
CDD	cd06407	7.74E-33	856	936	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 950 aa Download sequence Send to blast
MDLDPSSSSA AAAGGDGGGG GDVWPFDSFT TSLLFSSVSA SPPPLFSSVS ASPPPPPLPA 60 ASSSWLTPPS PLWLFDDRQL FPLEVGPALA VAAAAPEAAV AEEVHRARSG NSDTTSKRVE 120 QINSKCKFHL SLDDNSTDGA CLFKERLTRA LRYFKESTDQ HLLAQVWAPV KNGDRYVLTT 180 SGQPFVLDHQ SIGLLQYRAV SMMYMFSVDG DNAGELGLPG RVYKQKVPEW TPNVQYYRST 240 EYSRLNHAIS YNVHGTVALP VFDPSVQSCI AVVELIMTSK KMNYACEVDK VCKALEAVNL 300 KSTEILDHPN VQICNEGRQS ALVEILEILT VVCEEHKLPL SQTWVPCKYR SVLAHGGGVK 360 KSCLSFDGSC MGEVCMSTSD VAFHVIDARM WGFRDACVEH HLQKGQGVSG KAFIYHRPCF 420 SKDISQFCKL EYPLVHYARM FGLAGCFAIC LQSSYTGNDD YILEFFLPPS CRDEDDQNAL 480 LESILALMKQ CLRSLKVVGN GDSNEASLQI SNVLIIENED SKTNVHFENS EGCLRESPEG 540 DTHGGLYELD KGNSKVSERF LLADDNSQNN GTSVSRPNGS GASDSSLPHK SNKPPERRRG 600 KAEKTISLEV LQQYFSGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL 660 KQVIESVQGS DAAFNLTSIT GPLPIPVGPS SDSPNIEKAS QSKVAEFSNP AVDGDRDSSL 720 QKSLENASHF GILMSQQGFI DNSNNVQLEA DKASHSRSSS GEGSINSRTS EGSCQGSPAN 780 QTFVCKPIAS TFLEPQPNPE VFTKGPFQEP ELPLSRMLVE DSGSSKDLKN LFTSAVDQPI 840 LAPPSNLMLM QNSGTVTIKA SFKEDIVRFR FPCSGSVSVL KDDVAKRLKM DVGMFDIKYL 900 DDDHEWVKLA CNADLEECLE ISRHSGSHVI RLLVSDVAAH LGSSCGSSG*

Sequence ? help Back to Top

Protein Sequence Length: 950 aa Download sequence Send to blast

MDLDPSSSSA AAAGGDGGGG GDVWPFDSFT TSLLFSSVSA SPPPLFSSVS ASPPPPPLPA  60
ASSSWLTPPS PLWLFDDRQL FPLEVGPALA VAAAAPEAAV AEEVHRARSG NSDTTSKRVE  120
QINSKCKFHL SLDDNSTDGA CLFKERLTRA LRYFKESTDQ HLLAQVWAPV KNGDRYVLTT  180
SGQPFVLDHQ SIGLLQYRAV SMMYMFSVDG DNAGELGLPG RVYKQKVPEW TPNVQYYRST  240
EYSRLNHAIS YNVHGTVALP VFDPSVQSCI AVVELIMTSK KMNYACEVDK VCKALEAVNL  300
KSTEILDHPN VQICNEGRQS ALVEILEILT VVCEEHKLPL SQTWVPCKYR SVLAHGGGVK  360
KSCLSFDGSC MGEVCMSTSD VAFHVIDARM WGFRDACVEH HLQKGQGVSG KAFIYHRPCF  420
SKDISQFCKL EYPLVHYARM FGLAGCFAIC LQSSYTGNDD YILEFFLPPS CRDEDDQNAL  480
LESILALMKQ CLRSLKVVGN GDSNEASLQI SNVLIIENED SKTNVHFENS EGCLRESPEG  540
DTHGGLYELD KGNSKVSERF LLADDNSQNN GTSVSRPNGS GASDSSLPHK SNKPPERRRG  600
KAEKTISLEV LQQYFSGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL  660
KQVIESVQGS DAAFNLTSIT GPLPIPVGPS SDSPNIEKAS QSKVAEFSNP AVDGDRDSSL  720
QKSLENASHF GILMSQQGFI DNSNNVQLEA DKASHSRSSS GEGSINSRTS EGSCQGSPAN  780
QTFVCKPIAS TFLEPQPNPE VFTKGPFQEP ELPLSRMLVE DSGSSKDLKN LFTSAVDQPI  840
LAPPSNLMLM QNSGTVTIKA SFKEDIVRFR FPCSGSVSVL KDDVAKRLKM DVGMFDIKYL  900
DDDHEWVKLA CNADLEECLE ISRHSGSHVI RLLVSDVAAH LGSSCGSSG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000667G0080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565547.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A0E0JG46	0.0	A0A0E0JG46_ORYPU; Uncharacterized protein
STRING	OPUNC01G08520.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein