PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000653G0760

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Nin-like

Protein Properties

Length: 842aa MW: 92432.7 Da PI: 6.697

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000653G0760	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	8.8e-29	525	575	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI RWP+Rkik++ PH01000653G0760 525 EKTVSLHVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGITRWPSRKIKKV 575 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	514	595	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-25	527	575	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.83E-21	733	830	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-24	741	824	No hit	No description
SMART	SM00666	3.7E-20	743	826	IPR000270	PB1 domain
PROSITE profile	PS51745	21.29	743	826	IPR000270	PB1 domain
CDD	cd06407	3.87E-42	744	824	No hit	No description
Pfam	PF00564	1.9E-16	744	824	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MEEADPQPSI SLALTPSEGA AVDLDLLEQL LSGDNAWLEV ATNISRSPNF FASPSNILSD 60 ATTTTTTPAN TWWIQSSGAS SSVRERFDQA LAYIRETQSD ADVLVQLWVP VKSDDGQLVL 120 TTSGQPFTLD QSSDSLIRFR EVSTKYQFSA DVASGSAPGL PGRVFIGRLP EWSPDVRYFT 180 SYEYSRVSHA QYLDVHGTIG LPVFEKGNYS CLGVIELIMT RQKLNFTSEL NTICSALQAV 240 NLRSAEVSSI PRIKFNSTSY KDALPEILEV LRATCITHKL PLAQSWVTCA QQGKRGSRHS 300 DENYRYCIST VDAACYVNEP QMQSFHEACS EHHLLRGQGV AGKAFTTNQP CFLTDIGSST 360 KLEYPLSHHS KIFNLKGAVA IRLRCTRTGT ADFVLEFFLP TDSEVLEEQK AVLDSLSSTM 420 RSVCQTLRVV TDKEMEDEAM LEMNELNSFS PRGKNKVEEL SFGDNATEHR EEASWTSLGG 480 TSQKESDLVE LRMHGMLSPG GQGSSLAGAQ TTAEGSKVKR RTKTEKTVSL HVLRQYFAGS 540 LKDAAKSLGV CPTTLKRICR QHGITRWPSR KIKKVDHSLR KLQQIIDSVH GAETAFQLNT 600 LYKDLTNTSI SSDNNLSGSV TVPPTNQSNL TDFEKHQHNR LSSNLPSTSH SHSSCSHSSD 660 SSPSCSGGAT KHPLQVGADP TKSGSPVKHS PVQTMQTENT SINEHFSVQE APRDLLQDVT 720 EKAICGQHSS RSPSSPKQNA DVGMRVKATF GSEKVRFRLK PECDFQELKK EIAKRLSIGD 780 TSSLIVKYLD DDSEWVLVTC DADLQECLHV YKLADIQTIK ISVHLASSPA TRVTIGYTGL 840 S*

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MEEADPQPSI SLALTPSEGA AVDLDLLEQL LSGDNAWLEV ATNISRSPNF FASPSNILSD  60
ATTTTTTPAN TWWIQSSGAS SSVRERFDQA LAYIRETQSD ADVLVQLWVP VKSDDGQLVL  120
TTSGQPFTLD QSSDSLIRFR EVSTKYQFSA DVASGSAPGL PGRVFIGRLP EWSPDVRYFT  180
SYEYSRVSHA QYLDVHGTIG LPVFEKGNYS CLGVIELIMT RQKLNFTSEL NTICSALQAV  240
NLRSAEVSSI PRIKFNSTSY KDALPEILEV LRATCITHKL PLAQSWVTCA QQGKRGSRHS  300
DENYRYCIST VDAACYVNEP QMQSFHEACS EHHLLRGQGV AGKAFTTNQP CFLTDIGSST  360
KLEYPLSHHS KIFNLKGAVA IRLRCTRTGT ADFVLEFFLP TDSEVLEEQK AVLDSLSSTM  420
RSVCQTLRVV TDKEMEDEAM LEMNELNSFS PRGKNKVEEL SFGDNATEHR EEASWTSLGG  480
TSQKESDLVE LRMHGMLSPG GQGSSLAGAQ TTAEGSKVKR RTKTEKTVSL HVLRQYFAGS  540
LKDAAKSLGV CPTTLKRICR QHGITRWPSR KIKKVDHSLR KLQQIIDSVH GAETAFQLNT  600
LYKDLTNTSI SSDNNLSGSV TVPPTNQSNL TDFEKHQHNR LSSNLPSTSH SHSSCSHSSD  660
SSPSCSGGAT KHPLQVGADP TKSGSPVKHS PVQTMQTENT SINEHFSVQE APRDLLQDVT  720
EKAICGQHSS RSPSSPKQNA DVGMRVKATF GSEKVRFRLK PECDFQELKK EIAKRLSIGD  780
TSSLIVKYLD DDSEWVLVTC DADLQECLHV YKLADIQTIK ISVHLASSPA TRVTIGYTGL  840
S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000653G0760

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612116.1	0.0	protein NLP1-like isoform X2
Refseq	XP_015612117.1	0.0	protein NLP1-like isoform X2
Refseq	XP_025875998.1	0.0	protein NLP1-like isoform X2
TrEMBL	A0A0D3H9R1	0.0	A0A0D3H9R1_9ORYZ; Uncharacterized protein
STRING	OBART09G18730.2	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein