PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000653G0110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 218aa MW: 25201.2 Da PI: 8.1884 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.3 | 7.4e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+kv+g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++ PH01000653G0110 6 LPPGFRFHPTDEELVNYYLKRKVHGRSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRRI 98 79****************************.99**************84335556888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kktLv++kgrap+g +t+Wvmheyr+ PH01000653G0110 99 NY-QNRSIGMKKTLVYHKGRAPQGIRTSWVMHEYRI 133 *9.8899***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.306 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAPVGLPPGF RFHPTDEELV NYYLKRKVHG RSIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRRINY QNRSIGMKKT LVYHKGRAPQ 120 GIRTSWVMHE YRIEESECEN TMGIQDSYGL CRVFKKNVPF GEFEKQGECS SSQAKGNEEQ 180 VTNFGEAGQS SGANENDKDN SWMQFISDDL WSTNKTK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-53 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000653G0110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137596 | 1e-108 | AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence. | |||
GenBank | AP005564 | 1e-108 | AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence. | |||
GenBank | AP014965 | 1e-108 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-108 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186594.1 | 1e-149 | NAC domain-containing protein 86-like | ||||
Swissprot | Q9FFI5 | 2e-87 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A0D9XGG3 | 1e-151 | A0A0D9XGG3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G14720.1 | 1e-152 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-113 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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