PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000642G0890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 164aa MW: 17897.2 Da PI: 8.215 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49 | 1.4e-15 | 93 | 147 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ +r++kNRe+A rsR+RK+a+++eLe++v L eN +Lk + ++l+ e+a+l PH01000642G0890 93 RKNIRMMKNRESALRSRARKRAYVQELEKEVRRLVDENLKLKRQCKQLRTEMASL 147 7899**********************************************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-16 | 89 | 148 | No hit | No description |
SMART | SM00338 | 2.1E-14 | 89 | 153 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.875 | 91 | 147 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.57E-13 | 93 | 148 | No hit | No description |
CDD | cd14707 | 1.32E-18 | 93 | 140 | No hit | No description |
Pfam | PF00170 | 6.0E-13 | 93 | 148 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSMSEEAGNG SPQLSLSGCS SLFSISSSST GAHHNSNDVV NVAAAAARLK LPPPRLSLCV 60 GAGVGEEEEE EELQLDLQVG VTSCSCGGDD DERKNIRMMK NRESALRSRA RKRAYVQELE 120 KEVRRLVDEN LKLKRQCKQL RTEMASLIQP AAKSSLKRTS STQF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000642G0890 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098244 | 0.0 | FP098244.1 Phyllostachys edulis cDNA clone: bphylf047n22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966480.1 | 7e-41 | protein FD | ||||
TrEMBL | A0A2S3HG73 | 2e-39 | A0A2S3HG73_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DU08 | 2e-39 | A0A2T7DU08_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3B6SLF8 | 2e-39 | A0A3B6SLF8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3L6PES2 | 2e-39 | A0A3L6PES2_PANMI; Protein FD-like | ||||
TrEMBL | A0A446YZ52 | 2e-39 | A0A446YZ52_TRITD; Uncharacterized protein | ||||
TrEMBL | K3XZQ1 | 1e-39 | K3XZQ1_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J04759.1.p | 3e-40 | (Panicum virgatum) | ||||
STRING | Si007412m | 3e-40 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 6e-18 | bZIP family protein |