PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000639G0480
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 319aa    MW: 35178.4 Da    PI: 6.6567
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000639G0480genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-1261105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  PH01000639G0480  61 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 105
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-1655111IPR009057Homeodomain-like
PROSITE profilePS5129414.1856110IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-659111IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1859108IPR006447Myb domain, plants
SMARTSM007176.5E-1060108IPR001005SANT/Myb domain
PfamPF002494.7E-1061105IPR001005SANT/Myb domain
CDDcd001671.23E-763106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVSMSTTPHP LDCSDAGVGG GDPGKDHRMQ TREADAPMAD GEADDEGATR VRKPYTITKS  60
RESWTEPEHD KFLEALQLFD RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KNGTGEHLPP  120
PRPKRKSAHP YPHKASKKTP QIVLPQQASH IMEQGCAIPM DTSTVATNSS PNDAFPSWDS  180
GLAQHFSPRH TQGATNNCSS SIESQSGTCP TSEAIEQEIV LPALHAMPDF AQVYNFLGSI  240
FDPETSGHLQ RLREMDPIDV ETVLLLMKNL SLNLTSPNFE AHRRLLSSHG SSIDQVKHDS  300
IGDLGSTHTL HLPFMVTSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000639G0480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939900.0FP093990.1 Phyllostachys edulis cDNA clone: bphylf053n10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642931.10.0protein REVEILLE 6
SwissprotQ8H0W31e-91RVE6_ARATH; Protein REVEILLE 6
TrEMBLI1PYS20.0I1PYS2_ORYGL; Uncharacterized protein
STRINGORGLA06G0003400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-85MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]