PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000624G0480

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 366aa MW: 40414.8 Da PI: 7.7861

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000624G0480	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.3e-10	72	109	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 e+k rr+++NReAAr+sR+RKka++++Le+ +L PH01000624G0480 72 EDKIRRRLAQNREAARKSRLRKKAYVQNLETSRMKLAH 109 78999*************************86555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.8E-9	70	115	No hit	No description
SMART	SM00338	7.9E-9	70	149	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.059	72	116	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.4E-7	72	112	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-7	74	115	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-28	158	231	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MGIYGRRHQL PLAAGVWGDP FRPDSNAQAA ATMPMESTEA KFDDRVQDVD VPVQEALRSS 60 PDSFDQQGTR PEDKIRRRLA QNREAARKSR LRKKAYVQNL ETSRMKLAHL EQELNRARQQ 120 GVYISGSSPA GLSGPLDAGV AAFEMEYARW VEEQGKQTGE LRSALQAHAS EIQLQILVEA 180 GLAHYERLFQ AKSIAAKSDV FFVMFGMWRT PAEHIFLWIG GFRPSELLKI LGPQLEPLTE 240 QQATAVNMLQ HTARQAEDAL SQGMEKLKQT LAESLTTVVV AQGSDASFDA AAGYYTGQMA 300 SAMGSLDALA GFVDQADHLR QQTLQNMYKI LTARQAARGL LALGDYCQRL RALNSLWAAR 360 PREPA*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MGIYGRRHQL PLAAGVWGDP FRPDSNAQAA ATMPMESTEA KFDDRVQDVD VPVQEALRSS  60
PDSFDQQGTR PEDKIRRRLA QNREAARKSR LRKKAYVQNL ETSRMKLAHL EQELNRARQQ  120
GVYISGSSPA GLSGPLDAGV AAFEMEYARW VEEQGKQTGE LRSALQAHAS EIQLQILVEA  180
GLAHYERLFQ AKSIAAKSDV FFVMFGMWRT PAEHIFLWIG GFRPSELLKI LGPQLEPLTE  240
QQATAVNMLQ HTARQAEDAL SQGMEKLKQT LAESLTTVVV AQGSDASFDA AAGYYTGQMA  300
SAMGSLDALA GFVDQADHLR QQTLQNMYKI LTARQAARGL LALGDYCQRL RALNSLWAAR  360
PREPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000624G0480

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP097739	0.0	FP097739.1 Phyllostachys edulis cDNA clone: bphyem210f19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905948.1	1e-158	transcription factor TGA4 isoform X1
Refseq	XP_029117024.1	1e-158	transcription factor TGA4 isoform X1
Swissprot	A0A0P0WFC8	1e-131	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	M0SZ42	1e-155	M0SZ42_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P16630_001	1e-156	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-113	TGACG motif-binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]