PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000622G0760
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 564aa    MW: 62254.7 Da    PI: 6.3425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000622G0760genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.2e-31120176258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s +prsYYrCt ++C++kk+ver+++dp ++++tYeg H h
  PH01000622G0760 120 DDGYKWRKYGQKSIKNSANPRSYYRCTNPRCNAKKQVERASDDPGTLVVTYEGLHLH 176
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.613114179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-28114177IPR003657WRKY domain
SuperFamilySSF1182908.89E-26117177IPR003657WRKY domain
SMARTSM007743.2E-36119178IPR003657WRKY domain
PfamPF031061.3E-24120176IPR003657WRKY domain
SMARTSM00320380295336IPR001680WD40 repeat
SuperFamilySSF509782.24E-44307549IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.0E-41313550IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029424.495332547IPR017986WD40-repeat-containing domain
SMARTSM003200.19339379IPR001680WD40 repeat
SMARTSM003204.3382419IPR001680WD40 repeat
SMARTSM003201.0E-7423462IPR001680WD40 repeat
PfamPF004001.7E-5427462IPR001680WD40 repeat
PROSITE profilePS5008213.75430471IPR001680WD40 repeat
SMARTSM003207.8E-8499538IPR001680WD40 repeat
PfamPF004003.1E-4502538IPR001680WD40 repeat
PROSITE profilePS5008214.218506539IPR001680WD40 repeat
PROSITE patternPS006780525539IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MEELDESRYW HDDFGEELMR ELLDETAAAP SVDADSKDEE AEGPRRMEST VNKLISTVYS  60
GPTISDIESA LSLTGGEQQL VDGRKYHNSS PVVFSPEKVL SKMENRYTLK MKTCGDGLAD  120
DGYKWRKYGQ KSIKNSANPR SYYRCTNPRC NAKKQVERAS DDPGTLVVTY EGLHLHYTYS  180
HFLHQQQHQG PPVSLPKKPR LHPRGPTSLL DGPSSVAQES PLPHASTAAM AQAGDHSNSG  240
TVVDGFLFEH ALVPCSSSYS YSYLGEAAAG NLLHAGFADH EEQIITSSDG GLLEDVVPLL  300
VLDAPSLQDD FYLNLVDWSS QNMLAVGLGT CVYLWSASNS KVTKLCDLGP RDSVCAVQWT  360
REGSYLAIGT GLGDVQIWDS SRCKRIRNMG GHQTRAGVLA WSSCILSSGS RDKSILQHDI  420
RVPSDYISKF SGHRSEVCGL KWSHDDRELA SGGNDNQLLV WNQRSQQPVC NLAWCKNVNE  480
IVSTHGYSEN QIMVWKYPSM SKVATLTGHT LRVLYLAMSP DGQTIVTGAG DETLRFWNIF  540
PSVKTQAPVR DIGLWSFSRS HIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ui9_R5e-96297559174493FIZZY-RELATED PROTEIN HOMOLOG
5l9t_R5e-96297559174493Fizzy-related protein homolog
5l9u_R5e-96297559174493Fizzy-related protein homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000622G0760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095360.0AK109536.1 Oryza sativa Japonica Group cDNA clone:002-119-D01, full insert sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-43WRKY DNA-binding protein 49