PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000622G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 293aa    MW: 31089.5 Da    PI: 7.4063
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000622G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.44.3e-30129182155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  PH01000622G0670 129 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 182
                      59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.287126185IPR017930Myb domain
SuperFamilySSF466892.51E-19127186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-30128187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23130182IPR006447Myb domain, plants
PfamPF002494.8E-8132181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGEEANDYDF DILGGGGGSE HERVMEWETG LPGADELTPL SQPLVPPGMA AAFRIPPEPG  60
RTLLDLHRAS AATVSRLRRA SSSSSSSFPP FPAGGNGGSA LSSKAAAAMD DADSSAAPAE  120
ASAGAAVKRP RLVWTPQLHK RFVDVVAHLG IKNAVPKTIM QLMNVEGLTR ENVASHLQKY  180
RLYVKRMQGL SNEGSSPSDH IFASTPVPQS LHEPQAQVPV PMPYAAPAAA MYHPVPMGMA  240
VRYICDTVTA HPASCPRNLL VAQRFADVGD PVSLIHHVFL LRNLSAMTFV MK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-34129185157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000622G0670
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703068e-99HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
GenBankKF7694448e-99KF769444.1 Triticum aestivum cultivar Chinese Spring LUX-B gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817497.11e-107transcription factor PCL1
SwissprotQ94DH32e-87PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A2S3HMQ41e-106A0A2S3HMQ4_9POAL; Uncharacterized protein
STRINGSi002653m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.12e-53G2-like family protein