PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000617G0820
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 276aa    MW: 30760 Da    PI: 5.5995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000617G0820genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507e-162572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ lv +++ +G g+W++ ar  g++R +k+c++rw++yl
  PH01000617G0820 25 RGPWTVDEDLTLVSYIADHGEGRWNSLARAAGLKRKGKSCRLRWLNYL 72
                     89******************************99************97 PP
2Myb_DNA-binding54.82.1e-1778121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  PH01000617G0820  78 RGNFTADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 121
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0212072IPR017930Myb domain
SuperFamilySSF466891.5E-2923119IPR009057Homeodomain-like
SMARTSM007175.1E-132474IPR001005SANT/Myb domain
PfamPF002492.9E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-222679IPR009057Homeodomain-like
CDDcd001671.58E-92772No hitNo description
PROSITE profilePS5129422.95373127IPR017930Myb domain
SMARTSM007176.2E-1577125IPR001005SANT/Myb domain
PfamPF002496.2E-1678121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2380124IPR009057Homeodomain-like
CDDcd001672.00E-1180121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MACSAALLDD DLHRGVAQED AELRRGPWTV DEDLTLVSYI ADHGEGRWNS LARAAGLKRK  60
GKSCRLRWLN YLRPDVKRGN FTADEQLLIL DLHSRWGNRW SKIAQYLPGR TDNEIKNYWR  120
TRVQNHARQL NCDASSSRFK DAMRCLWTPR LVDQRFQQAA GVVGDHGYTA GAGGHAVSRL  180
ASVGCMENSS MVTPSSSGSL ASESYGGGLY ANVHEGETVN GGDDRMQEAN HGLWSGSTQD  240
DNGQLQDPEL TGWVQGFSED LPENFWSLED IWWMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261311915120MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15662LKRKGKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000617G0820
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4061841e-150CU406184.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664647.11e-117PREDICTED: transcription factor MYB108-like
SwissprotQ2QZJ81e-107JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA2ZLP81e-117A2ZLP8_ORYSI; Uncharacterized protein
STRINGMLOC_6821.21e-117(Hordeum vulgare)
STRINGOB12G22880.11e-117(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-73myb domain protein 78
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]