PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000604G0860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 26573.9 Da PI: 8.0726 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v++lG ++W+ a+ g++Rt+k+c++rw +yl PH01000604G0860 21 KGPWTEQEDARLVWFVRLLGERRWDFLAKVSGLNRTGKSCRLRWVNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 35.6 | 2.2e-11 | 74 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T++E+ l v++++ + W++Ia+ ++ gRt++++k++w++++ PH01000604G0860 74 RGRMTPDEERLVVELHA----K-WSRIAKGVP-GRTDNEIKNYWRTHM 115 89********9999997....5.999******.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.149 | 16 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.52E-24 | 19 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-14 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-8 | 23 | 68 | No hit | No description |
SMART | SM00717 | 8.3E-9 | 73 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.622 | 73 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.6E-9 | 74 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.97E-9 | 76 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-19 | 76 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVAAAKSKAK TAATKGVEVR KGPWTEQEDA RLVWFVRLLG ERRWDFLAKV SGLNRTGKSC 60 RLRWVNYLHP GLKRGRMTPD EERLVVELHA KWSRIAKGVP GRTDNEIKNY WRTHMRKKKA 120 QQEKATRAGS TTTSMSMSAS PASSSSSNIN QAHEAVLRGN CEDEEEAATA ASQELYTSMH 180 MDLQLWNVID PGSYVDSWSS GAAVSMPSPV WEYCSDSLWG IDDEEEEEYK KMLDAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-23 | 18 | 118 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000604G0860 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951939 | 2e-68 | JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds. | |||
GenBank | JN191346 | 2e-68 | JN191346.1 Triticum aestivum MYB13-2 mRNA, complete cds. | |||
GenBank | JN191347 | 2e-68 | JN191347.1 Triticum aestivum MYB13-3 mRNA, complete cds. | |||
GenBank | JX183617 | 2e-68 | JX183617.1 Triticum aestivum MYB protein (MYB56) mRNA, MYB56-B allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085908.1 | 2e-71 | transcription factor MYB59-like | ||||
Swissprot | Q4JL76 | 1e-63 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A0D3G2I9 | 2e-72 | A0A0D3G2I9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G01080.1 | 4e-73 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 7e-60 | myb domain protein 59 |
Publications ? help Back to Top | |||
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