PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000604G0620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 132aa MW: 14622.9 Da PI: 9.6704 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.5 | 5e-20 | 24 | 58 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++ PH01000604G0620 24 CADCHTTKTPLWRGGPTGPKSLCNACGIRYRKRRR 58 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-16 | 18 | 74 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 13.191 | 18 | 54 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-13 | 18 | 57 | No hit | No description |
SMART | SM00401 | 3.5E-18 | 18 | 70 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.96E-15 | 23 | 59 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 24 | 49 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.9E-18 | 24 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MDPSPPVDKV DPDECTASGE PKACADCHTT KTPLWRGGPT GPKSLCNACG IRYRKRRRQA 60 LGLEAAAEGA EQQQQKKKSK KEDEVTVELH MVGFGKDVVL KQRRRMRRRK CLGEEERAAI 120 LLMALSSGVI YA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 57 | RKRRR |
2 | 101 | 107 | QRRRMRR |
3 | 102 | 109 | RRRMRRRK |
4 | 103 | 108 | RRMRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000604G0620 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095399 | 0.0 | FP095399.1 Phyllostachys edulis cDNA clone: bphylf037e06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631979.1 | 2e-60 | GATA transcription factor 16 | ||||
TrEMBL | A0A0E0D938 | 8e-60 | A0A0E0D938_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G36180.1 | 1e-60 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 2e-25 | GATA transcription factor 16 |