PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000600G0490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 396aa    MW: 42734.2 Da    PI: 7.657
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000600G0490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61.1e-31110163255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PH01000600G0490 110 PRMRWTTALHQHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 163
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-15107163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28107163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23110163IPR006447Myb domain, plants
PfamPF002497.2E-8111162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSTTTSVDTT PQTSTTTARA PDLSLHISPP SPDASGGEMP EPSLRLGLVD TAAAKRPVDA  60
VQHHSHQVQQ RLHQPNQTHG FKKSSAAGGP VAGGGGARPA GGGKRSTRAP RMRWTTALHQ  120
HFVHAVELLG GHERATPKSV LELMNVKDLT LAHVKSHLQM YRTVKGTDRS CVAGHGQTRD  180
MGFLMRGGVV AGEVDGFDGF NNNMVNTTSN NTTARRSQSP GEQLQDHHHN AWSQPAAARL  240
PLPYLTLSES DRLLMEQSQQ GWIKGGEQDH EEAVHLGQED HITQEKGSSA ARHEHADTAI  300
RRPSSNTSSS DDTIASSDWL ALPQQYYGNG DGGTADDRRR RRHHQYDQAA AAMVVSSMKP  360
PSLEMSLGRQ GWQMDQCSGA ESSASASKEL TLLKCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-16111165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16111165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16111165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16111165357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000600G0490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002030.0FP100203.1 Phyllostachys edulis cDNA clone: bphylf053h02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183178.11e-104probable transcription factor KAN4
TrEMBLA0A0A9GQA61e-106A0A0A9GQA6_ARUDO; Uncharacterized protein
STRINGEMT197862e-96(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-36G2-like family protein