PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000589G0830
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 326aa    MW: 36240.5 Da    PI: 5.1287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000589G0830genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.7e-51331652128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s
  PH01000589G0830  33 LPGFRFHPTDEELVTFYLRRKVARKPLSV-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYS 125
                      69***************************.89***************445556889************************************** PP

              NAM  95 k......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +      +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  PH01000589G0830 126 AvadaanSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 165
                      99999888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-5431177IPR003441NAC domain
PROSITE profilePS5100550.63632190IPR003441NAC domain
PfamPF023656.7E-2534165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAPKEFTRES MDKIKSDGEV LLAGDEEEED VVLPGFRFHP TDEELVTFYL RRKVARKPLS  60
VEIIKEMDIY KHDPWDLPKA STVGGEKEWY FFCLRGRKYR NSIRPNRVTG SGFWKATGID  120
RPIYSAVADA ANSGESIGLK KSLVYYRGSA GKGTKTDWMM HEFRLPPAAA TNTSPSMQEA  180
DLQEERHLQE AAAAGVEAAA GHQGSAAGPG SFESDGGDEY MNCLAPAAAP GIQQQQHVSQ  240
VSMMNSSCFF KETMHNQQFQ GQWNALPAAP VPEQKPQNPS SMTIAFHQND HSLAANDFYK  300
DGYWDEIARM MEISDPTGFY DCRYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-47251658140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000589G0830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735391e-167AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981565.11e-169transcription factor JUNGBRUNNEN 1
TrEMBLK4AC401e-167K4AC40_SETIT; Uncharacterized protein
STRINGSi036447m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-75NAC domain containing protein 42