PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000585G0570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | BES1 | ||||||||
Protein Properties | Length: 225aa MW: 24393.3 Da PI: 8.9797 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 142 | 5.6e-44 | 45 | 200 | 5 | 134 |
DUF822 5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..................eeae 80 r++ ++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw++++DGtt+r +s+p+ a+ PH01000585G0570 45 RRRCEREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTIQPDGTTFRSSSQPPplppaqlwyisfllsnqrCDAK 138 8899**************************************************************9999876654433333333322111345 PP DUF822 81 aagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.......a 134 g+++ +s+e+++ ++l+s+a+ +p++s+++++++++++spsslds+ +a++ PH01000585G0570 139 CQGTFQVTSVETPTLtNALNSYAIGTPLDSQASVLQTDDSLSPSSLDSVVVAEQsiknenyG 200 6788999999999988999********************************99855554442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.7E-44 | 45 | 211 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSMKHPHPQV RDAEPSTSPP PPPDRRPRGF ASSAADTSAA APPPRRRCER EKERTKLRER 60 HRRAITSRML AGLRQHGNFP LPARADMNDV LAALARAAGW TIQPDGTTFR SSSQPPPLPP 120 AQLWYISFLL SNQRCDAKCQ GTFQVTSVET PTLTNALNSY AIGTPLDSQA SVLQTDDSLS 180 PSSLDSVVVA EQSIKNENYG NSSSVNSLNC LENDQVSKAL HLIG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000585G0570 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120049 | 3e-70 | AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence. | |||
GenBank | AP004886 | 3e-70 | AP004886.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0576F08. | |||
GenBank | AP014958 | 3e-70 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622759.1 | 3e-72 | beta-amylase 8 | ||||
TrEMBL | A0A0E0JV31 | 5e-71 | A0A0E0JV31_ORYPU; Beta-amylase | ||||
TrEMBL | A0A0E0JV32 | 4e-71 | A0A0E0JV32_ORYPU; Beta-amylase | ||||
TrEMBL | A0A0E0JV33 | 2e-71 | A0A0E0JV33_ORYPU; Beta-amylase | ||||
TrEMBL | Q0E497 | 2e-73 | Q0E497_ORYSJ; Beta-amylase | ||||
STRING | OS02T0129600-01 | 3e-74 | (Oryza sativa) | ||||
STRING | OPUNC02G01770.1 | 8e-72 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 6e-24 | beta-amylase 2 |