PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000581G0530
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family RAV
Protein Properties Length: 342aa    MW: 36089.8 Da    PI: 10.1185
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000581G0530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-123987155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     s+ykGV   + +grW A+I+       r +r++lg+f  + +Aa+a++ a+++++g
  PH01000581G0530 39 SKYKGVVSQP-NGRWGAQIYQ------RhQRVWLGTFAGEADAARAYDVAAQRFRG 87
                     89****8888.8******999......44**********99*************98 PP
2B372.94e-23174260186
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed   ++W+v+       ++yvltkGW++Fvk++gL +gD+v F+++ 
  PH01000581G0530 174 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaAGGESKGVLLNFEDAACKVWRVRS------QSYVLTKGWSRFVKEKGLHAGDVVGFYRSA 260
                      89*******************************55567999**************99......89************************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-83987IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-163995IPR016177DNA-binding domain
CDDcd000187.59E-223995No hitNo description
PROSITE profilePS5103219.4934095IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-194095IPR001471AP2/ERF domain
SMARTSM003804.0E-2540101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.8E-29169274IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-21172271No hitNo description
SuperFamilySSF1019362.35E-23172262IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.815174277IPR003340B3 DNA binding domain
SMARTSM010196.1E-12174267IPR003340B3 DNA binding domain
PfamPF023627.8E-20174260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGSGASAVVD AAEPGAEADS GGAGAGRVGA GAGGKLPSSK YKGVVSQPNG RWGAQIYQRH  60
QRVWLGTFAG EADAARAYDV AAQRFRGRDA VTNFRPLAEA DPDAAAELRF LASRSKPEVV  120
DMLRKHTYFD ELAHSRRAFA ASAPSSVPTS SLPHAYGQSS SPPSPAAAAR EHLFDKTVTP  180
SDVGKLNRLV IPKQHAEKHF PLQLPAAGGE SKGVLLNFED AACKVWRVRS QSYVLTKGWS  240
RFVKEKGLHA GDVVGFYRSA TGAGNDSKLF IDCKLRAALT GPADQPEPVA KAVRLFGVNL  300
LTAPASAAAP ENEMAGCKRA RDMATPPQAA FKKQCIELTL R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-411682762113B3 domain-containing transcription factor NGA1
5os9_B1e-411682762113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000581G0530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0982980.0FP098298.1 Phyllostachys edulis cDNA clone: bphyem207d01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622542.11e-168AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX91e-169Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A0E0JMR41e-176A0A0E0JMR4_ORYPU; Uncharacterized protein
STRINGOPUNC01G27280.11e-177(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-84related to ABI3/VP1 2