PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000570G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 275aa    MW: 31288.8 Da    PI: 9.8199
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000570G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.4e-1799143248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      gr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  PH01000570G0460  99 GRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 143
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-978105IPR009057Homeodomain-like
PROSITE profilePS500904.4267892IPR017877Myb-like domain
SuperFamilySSF466891.8E-2178150IPR009057Homeodomain-like
PROSITE profilePS5129425.04393147IPR017930Myb domain
SMARTSM007176.3E-1697145IPR001005SANT/Myb domain
PfamPF002491.4E-1499142IPR001005SANT/Myb domain
CDDcd001673.32E-12100143No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19106144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MESSVPMIMA DRKANAFHYQ DKKHGRNQIE TLRRFPFPMQ SVVARLEFIK DLILKLEPTS  60
TQRKKSKKTG SQPIQGLNRT GKSCRLRWVN YLHPGLKHGR MSPHEERLIL ELHARWGNRW  120
SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNVSPSSSS SSLTYQSCHP EAPSIIGIDE  180
QELHGGSSSC ITSILKGTPA DMDGYPMDQI WMEIEAPTGQ GFYEGKDNAC GSLSGPLLPS  240
PMWDYYCPEA CWKMGDEIKM APQFGYSKGV GPCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-177914737105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-177914737105C-Myb DNA-Binding Domain
1msf_C2e-177914737105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000570G0460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877776.11e-134myb-related protein MYBAS2 isoform X2
SwissprotQ4JL761e-112MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLM7ZU891e-147M7ZU89_TRIUA; Myb-related protein MYBAS2
STRINGTRIUR3_16862-P11e-147(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-51myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]