PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000569G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 328aa    MW: 35851.5 Da    PI: 4.5191
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000569G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-2072125356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  PH01000569G0270  72 KKRRLTAEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 125
                      56789************************************************9 PP
2HD-ZIP_I/II132.31.9e-4271162192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl++eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++Lr+++ 
  PH01000569G0270  71 EKKRRLTAEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRTDHDALLQDNHRLRSQVI 162
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-2065129IPR009057Homeodomain-like
PROSITE profilePS5007118.17267127IPR001356Homeobox domain
SMARTSM003898.3E-2070131IPR001356Homeobox domain
PfamPF000461.9E-1772125IPR001356Homeobox domain
CDDcd000865.53E-2072128No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2173134IPR009057Homeodomain-like
PRINTSPR000312.1E-698107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000312.1E-6107123IPR000047Helix-turn-helix motif
PfamPF021831.7E-17127169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MESVRLVFNT SGSVAGQMLF LDCGAGGGGG MFHRGERPVL GMEEGGHGVK RPFFTSPNKL  60
LEEYYDEQLP EKKRRLTAEQ VHLLERSFEE ENKLEPERKT ELARKLGLQP RQVAVWFQNR  120
RARWKTKQLE RDFDRLKASF DALRTDHDAL LQDNHRLRSQ VISLTDKLQE KEAAEGSVGP  180
AFDASELPAA DVKVSAADAD QPAADDPAVA AFEVQQVKTE DRLSTGSGGS AVVDADALLG  240
CGGRLAAVDS SVESYFPGGD EYHDCVMGPV DHGAGGIQSE EDDGAVSDEG CSYYADDAGV  300
LFAGHGQHHH AGDDEDDGQI SCWMWKWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000569G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0912740.0FP091274.1 Phyllostachys edulis cDNA clone: bphyem208e15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647837.11e-166PREDICTED: homeobox-leucine zipper protein HOX16 isoform X1
SwissprotQ6YWR41e-153HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLJ3LGQ11e-165J3LGQ1_ORYBR; Uncharacterized protein
STRINGOB02G38180.11e-165(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-65homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]