PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000567G0450
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family E2F/DP
Protein Properties Length: 402aa    MW: 44912.1 Da    PI: 9.2184
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000567G0450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.85.8e-211783171
          E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealn.liekkekneirwkg 71
                     rk+ksL+ll+++f+ l+++ + + + l+++a++L    v  +rRRiYDi+NVLe+++ ++ +k+kn+++w+g
  PH01000567G0450 17 RKQKSLGLLCSNFVGLYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGkILVRKAKNRYSWIG 83
                     79*****************999************...**..***************7466778*******98 PP
2E2F_TDP79.72.6e-25158238171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL++ltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  PH01000567G0450 158 RKEKSLGVLTQNFVKLFLTMEVDTISLDEAAKLLLGEgheetNMRTKVRRLYDIANVLSSLNLIEKtqqvdTRKPAFRWLG 238
                      79********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-231384IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.57E-131682IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-251783IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-181883IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-23155239IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-32158238IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.2E-21159238IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.53E-13160239IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MFAEGGGAKL HHHAYSRKQK SLGLLCSNFV GLYNRDDVES IGLDDAARRL GVERRRIYDI  60
VNVLESVGKI LVRKAKNRYS WIGFGGVLMA LRELKERALR EKSSLAPLPV EEPSAANMSD  120
DEDDDKLGDT DSEMLSQPVD NPSDKPAAPR CRLISDHRKE KSLGVLTQNF VKLFLTMEVD  180
TISLDEAAKL LLGEGHEETN MRTKVRRLYD IANVLSSLNL IEKTQQVDTR KPAFRWLGTA  240
GKLKAENGVT VAVPPPRKIV SNKRAFGTEL TNIDMNRSRL DSTIQKKAKL AQGGGDILKN  300
CKLDVQRQLG LGDKSGFVYG PFHPSGARKQ ELDDCNKARQ RDGAQDWESL ADSFRPQYQN  360
QVLGDLFAHY VEAWKSWYSE FAQGSSIMQQ HFGKPIINQL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-34162303228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000567G0450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647865.10.0PREDICTED: E2F transcription factor-like E2FE
TrEMBLB8AIG40.0B8AIG4_ORYSI; Uncharacterized protein
STRINGORGLA02G0274600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-102DP-E2F-like 1