PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000558G0420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 553aa    MW: 61568.9 Da    PI: 8.1276
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000558G0420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-2082137156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PH01000558G0420  82 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 137
                      688999***********************************************998 PP
2START137.41.5e-4313824794206
                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                      m+ e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwvehv++++r++h++++ lv+
  PH01000558G0420 138 MSVEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNIYKLLVN 227
                      899****************************************98....7******************************************** PP

                      HHHHHHHHHHHHHTXXXXXX CS
            START 187 sglaegaktwvatlqrqcek 206
                      sgla+ga++wv tl+rqce+
  PH01000558G0420 228 SGLAFGARRWVGTLDRQCER 247
                      ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002341.0E-2256247IPR002913START domain
Gene3DG3DSA:1.10.10.602.4E-2262137IPR009057Homeodomain-like
SuperFamilySSF466892.44E-1969137IPR009057Homeodomain-like
PROSITE profilePS5007116.84479139IPR001356Homeobox domain
SMARTSM003891.1E-1780143IPR001356Homeobox domain
CDDcd000861.14E-1881137No hitNo description
PfamPF000463.9E-1882137IPR001356Homeobox domain
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
SuperFamilySSF559617.94E-24135249No hitNo description
PfamPF018524.3E-36138247IPR002913START domain
PROSITE profilePS5084827.005146250IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-4146242IPR023393START-like domain
SuperFamilySSF559611.1E-20268443No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MRDRRAQAAQ QPNLLDNQQL QQALQQQHLL EQIPATTAES GDNMIHGRTS DPLGDEFESK  60
SGSENVDGVS VDDQDPNQRP RKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ RKELSRELGL  120
EPLQVKFWFQ NKRTQMKMSV EFQVPSPLVP TRESYFVRYC KQNSDGTWAV VDVSLDSLRP  180
SPVLKCRRRP SGCLIQEMPN GYSKVTWVEH VEVDDRSVHN IYKLLVNSGL AFGARRWVGT  240
LDRQCERLAS VMAINIPTSD IGVITSSEGR KSMLKLAERM VTSFCGGVTA SVAHQWTTLS  300
GSGAEDVRVM TRKSVDDPGR PPGIVLNAAT SFWLPVQPKR VFDFLRDESS RSEWDILSNG  360
GVVQEMAHIA NGRDHGNCVS LLRVNSTNSN QSNMLILQES CTDASGSYVI YAPVDVVAMN  420
VVLNGGDPDY VALLPSGFAI LPDGMSIDMR ACQIASMLGY SISNSKARAI RSSFIESNKV  480
PMLVLEEQQN FGAFISGKSR THLRLSLPCG ARRLGCFSLI FPQIQEISRS DSVLSKCCKN  540
ASPLRKGGWF GY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000558G0420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658190.0AK065819.1 Oryza sativa Japonica Group cDNA clone:J013043D01, full insert sequence.
GenBankAK1015630.0AK101563.1 Oryza sativa Japonica Group cDNA clone:J033050E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823505.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A446MQT00.0A0A446MQT0_TRITD; Uncharacterized protein
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]