PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000548G0730

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 468aa MW: 51782.7 Da PI: 7.1704

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000548G0730	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.2e-31	270	324	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerFveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYR PH01000548G0730 270 KTRLRWTLELHERFVEAVNKLEGPEKATPKGVLKLMKVEGLTVYHVKSHLQKYRH 324 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.221	267	327	IPR017930	Myb domain
SuperFamily	SSF46689	1.52E-16	268	324	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-29	269	325	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	270	324	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	272	323	IPR001005	SANT/Myb domain
Pfam	PF14379	3.1E-23	359	406	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MSTESVIAVK QFTSESMAHT CTASQPSVHE LFNAKYDHCG STNDTPSSCT TQSSDIKTEL 60 IRSSSMPRIL PFELQKCSTD SNPESSLSRI SKADLADPIL SKFSTFCTSL YSSSSTNSKS 120 CRQTSASPFL PHPPKCEQQQ NSAGQSSCPS SLLFGADLSN GGHGDAEYSD DLKDYLNLSG 180 DGSFHGERNA MTFNEHMEFQ FLSEQLVIAV TNNEESPRLD DIYEYDRPPQ HSSLPVSSFS 240 DQEGLQNAGS PVKIQLSSSR SSSGAAACSK TRLRWTLELH ERFVEAVNKL EGPEKATPKG 300 VLKLMKVEGL TVYHVKSHLQ KYRHAKYLPE TKEDKKSSSE YKKAQSATNV NGPGKKKSFQ 360 MAEALRMQME VQKQLHEQLE VQRQLQLRIE EQGRYLQKIL EEQQKARNSL SSMRSSTGES 420 PESTLKGKSK IKADTSSAPS SKHKISDIDM ECYSQVDNQK AKLQVDL*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MSTESVIAVK QFTSESMAHT CTASQPSVHE LFNAKYDHCG STNDTPSSCT TQSSDIKTEL  60
IRSSSMPRIL PFELQKCSTD SNPESSLSRI SKADLADPIL SKFSTFCTSL YSSSSTNSKS  120
CRQTSASPFL PHPPKCEQQQ NSAGQSSCPS SLLFGADLSN GGHGDAEYSD DLKDYLNLSG  180
DGSFHGERNA MTFNEHMEFQ FLSEQLVIAV TNNEESPRLD DIYEYDRPPQ HSSLPVSSFS  240
DQEGLQNAGS PVKIQLSSSR SSSGAAACSK TRLRWTLELH ERFVEAVNKL EGPEKATPKG  300
VLKLMKVEGL TVYHVKSHLQ KYRHAKYLPE TKEDKKSSSE YKKAQSATNV NGPGKKKSFQ  360
MAEALRMQME VQKQLHEQLE VQRQLQLRIE EQGRYLQKIL EEQQKARNSL SSMRSSTGES  420
PESTLKGKSK IKADTSSAPS SKHKISDIDM ECYSQVDNQK AKLQVDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-25	270	327	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-25	270	327	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-25	270	327	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-25	270	327	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-25	270	327	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-25	270	327	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-25	270	327	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-25	270	327	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000548G0730

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627390.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_015627391.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	0.0	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A0A9P2D7	0.0	A0A0A9P2D7_ARUDO; Uncharacterized protein
STRING	OGLUM02G03100.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	4e-56	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]