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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PH01000532G0650 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 160aa MW: 16834.8 Da PI: 4.2778 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 119.9 | 1.1e-37 | 1 | 72 | 30 | 101 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
+kadedv+misaeaPvl++ka elfilelt+rswlhaeenkrrtl+++d+aaa++rtd+fdflvdivpr+e
PH01000532G0650 1 MKADEDVRMISAEAPVLFAKASELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIVPREEA 72
9********************************************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF00808 | 2.4E-12 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| SuperFamily | SSF47113 | 4.86E-23 | 1 | 69 | IPR009072 | Histone-fold |
| Gene3D | G3DSA:1.10.20.10 | 1.7E-28 | 1 | 69 | IPR009072 | Histone-fold |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 160 aa Download sequence Send to blast |
MKADEDVRMI SAEAPVLFAK ASELFILELT IRSWLHAEEN KRRTLQRNDV AAAIARTDVF 60 DFLVDIVPRE EAKEEPGSAL GFAVGGGTAG AAGLPYYYPP MGQPAPMMPA WHVPAWDPAW 120 QQGAADVDQG AGSFGEEGQG FTGHGGAAPG FPPAPPSSE* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5g49_B | 2e-38 | 1 | 69 | 27 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 41 | 47 | RRTLQRN |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | PH01000532G0650 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FP091952 | 0.0 | FP091952.1 Phyllostachys edulis cDNA clone: bphylf052o15, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001147992.1 | 9e-84 | nuclear transcription factor Y subunit C-1 | ||||
| Refseq | XP_008675138.1 | 9e-84 | nuclear transcription factor Y subunit C-1 isoform X1 | ||||
| Swissprot | A6BLW4 | 3e-75 | NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2 | ||||
| TrEMBL | A0A317YFQ9 | 2e-82 | A0A317YFQ9_MAIZE; Nuclear transcription factor Y subunit C-2 | ||||
| TrEMBL | B6SWV5 | 2e-82 | B6SWV5_MAIZE; Nuclear transcription factor Y subunit C-1 | ||||
| TrEMBL | K0DFD1 | 2e-82 | K0DFD1_MAIZE; CA5P11 CCAAT-HAP5 type transcription factor (Fragment) | ||||
| STRING | GRMZM2G089812_P01 | 4e-83 | (Zea mays) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP7345 | 35 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G63470.2 | 7e-45 | nuclear factor Y, subunit C4 | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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