PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000520G0240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 28279.1 Da PI: 7.8076 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1.1e-14 | 3 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+++ ++++G g +W + ++t+g+ R++ +c+srw++yl PH01000520G0240 3 KGKWSKEEDNLIKNHIEKYGIGrSWQALSNTLGLQRCGRSCRSRWLNYL 51 79******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 33.7 | 8.6e-11 | 58 | 101 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T+ E++++ + + G+ W+ Ia ++ gRt+ +k++w++ PH01000520G0240 58 GNFTPAEEKIICEMYSKRGSC-WSIIATQLP-GRTDLAIKNYWNST 101 89*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.954 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.41E-25 | 2 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-10 | 2 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-12 | 3 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-20 | 4 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-9 | 5 | 51 | No hit | No description |
SMART | SM00717 | 8.8E-10 | 56 | 104 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.282 | 56 | 106 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-9 | 58 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.77E-7 | 59 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-21 | 59 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MKKGKWSKEE DNLIKNHIEK YGIGRSWQAL SNTLGLQRCG RSCRSRWLNY LRPGLKHGNF 60 TPAEEKIICE MYSKRGSCWS IIATQLPGRT DLAIKNYWNS TLKKRFPAAR GTAARRRHRP 120 AASTSSDAAT PDLALVVYSE ESTTTGSSSH DGADKPVLTG SPSVQVQVQP PPAGAGGNAP 180 NEEPIAAVPI SGPVRIEQKP ALGSLTLEKT PPPPPPGEQT GEMDIACAPM SPIPLAFMEP 240 ELACIIDFDD IDSFLPWFDD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 1 | 106 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000520G0240 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 8e-31 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661280.1 | 1e-120 | transcription factor RAX2 | ||||
TrEMBL | A0A368SIM7 | 1e-118 | A0A368SIM7_SETIT; Uncharacterized protein | ||||
STRING | Si037244m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 1e-42 | myb domain protein 87 |