PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000518G0720
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8905.31 Da    PI: 10.7957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000518G0720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.22.1e-231059250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                     rie+  +rqv+f+kRr+g+lKKAeEL vLCda+va+++fs+ +g+l+ ++
  PH01000518G0720 10 RIEERGRRQVSFAKRRKGLLKKAEELAVLCDAQVALLVFSPfDGNLQHFP 59
                     8***************************************9789999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.32149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-22368IPR002100Transcription factor, MADS-box
CDDcd001202.77E-24359No hitNo description
PRINTSPR004041.4E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-211058IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MVRGRVELRR IEERGRRQVS FAKRRKGLLK KAEELAVLCD AQVALLVFSP FDGNLQHFPE  60
LSTQASYDWN VKDFRK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000518G0720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564959.19e-21MADS-box transcription factor 51 isoform X2
SwissprotQ9XJ611e-19MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A3S6JTX71e-28A0A3S6JTX7_DENLA; MADS64
STRINGBRADI2G59187.13e-20(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-20AGAMOUS-like 79
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]