PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000517G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 695aa    MW: 76122.6 Da    PI: 6.31
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000517G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.3e-211671156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     r++ +++t+ q+++Le++F+++++p++++r++L+++lgL+ rq+k+WFqNrR+++k
  PH01000517G0290 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMK 71
                     688899***********************************************998 PP
2START157.31.2e-492124343206
                      HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      a +a++el+++a+a++ +Wvks+     e++n d++ ++f++ ++       ++e +r+sg+v+m ++ lv  ++d++ +W e ++    ka t
  PH01000517G0290 212 ATRAMDELIRLAQAGDHVWVKSPggdgrEMLNVDTYDSIFSKPGSsfrapdINVEGSRDSGLVFMSAVALVDVFMDSS-KWMEFFPsivsKART 304
                      6789************************************887779****99**************************.*************** PP

                      EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      ++v+ +g     + l  m+ el  +sp+vp R+f f+Ry+rq ++g w+i+dvSvd + +        R+++l Sg+li ++sng+skvtwveh
  PH01000517G0290 305 IDVLVNGmtgrsESLIMMYEELHIMSPVVPtREFSFLRYCRQIEQGLWAIADVSVDLQHDSH-FGTPPRSRRLSSGCLIADMSNGYSKVTWVEH 397
                      *********************************************************99987.45556888*********************** PP

                      EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++ ++ +l+r lv sg+a+ga +w+ +lqr ce+
  PH01000517G0290 398 MEMEKVSINMLYRDLVLSGAAFGAHRWLGALQRACER 434
                      ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-20976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-221078IPR009057Homeodomain-like
PROSITE profilePS5007118.2041373IPR001356Homeobox domain
SMARTSM003894.8E-201477IPR001356Homeobox domain
CDDcd000865.33E-201574No hitNo description
PfamPF000461.8E-181671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084843.079201437IPR002913START domain
SuperFamilySSF559614.33E-33202436No hitNo description
CDDcd088755.26E-104205433No hitNo description
SMARTSM002343.8E-32210434IPR002913START domain
PfamPF018529.9E-42212434IPR002913START domain
Gene3DG3DSA:3.30.530.208.7E-5277436IPR023393START-like domain
SuperFamilySSF559612.54E-22452686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MDFGDDQEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAQLSR ELGLEPRQIK  60
FWFQNRRTQM KAQHERADNC FLRAENDKIR CENIAMREAL KNVICPTCGG PPVAEDYFDE  120
QKLRMENARL KEELDRVSNL TSKYLGRPFT QMTPMTPMSV SSLDLSVGGM GGPALGGPSL  180
DLDLLSGGSS GMPFQLPAPV SDMERPMMAD MATRAMDELI RLAQAGDHVW VKSPGGDGRE  240
MLNVDTYDSI FSKPGSSFRA PDINVEGSRD SGLVFMSAVA LVDVFMDSSK WMEFFPSIVS  300
KARTIDVLVN GMTGRSESLI MMYEELHIMS PVVPTREFSF LRYCRQIEQG LWAIADVSVD  360
LQHDSHFGTP PRSRRLSSGC LIADMSNGYS KVTWVEHMEM EKVSINMLYR DLVLSGAAFG  420
AHRWLGALQR ACERYASLMT LGVPLHDMAG VTPEGKRSMM KLSQRMVSSF CASLCASNLH  480
RWTTLSGSDD VSVYVSKHRS SDPGQPNGVV LSAATSIWLP VPCDHVFAFV RDENARSQWD  540
VLSHGNQVQE VSRIPNGSNP GNCISLLRGL NASQNNMLIL QESCTDASGS LVVYSPIDIP  600
AANVVMSGED PSSIPLLPSG FTILPDGRPG SAAGASTSAT PLGTPMGSVV TVAFQILVSS  660
LPSSKLNAES VATVNGLINT TVQQIKAALN CSGH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000517G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668130.0BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642098.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A0E0L9560.0A0A0E0L956_ORYPU; Uncharacterized protein
STRINGOPUNC06G06470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11