PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000515G0560

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB

Protein Properties

Length: 277aa MW: 31172 Da PI: 5.6826

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000515G0560	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.9e-18	32	79	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++++G g+W+t ar g++Rt+k+c++rw++yl PH01000515G0560 32 RGPWTVDEDLTLINYIAEHGEGRWNTLARAAGLKRTGKSCRLRWLNYL 79 89********************************************97 PP
2	Myb_DNA-binding	57.5	3.2e-18	85	128	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ PH01000515G0560 85 RGNFTAEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 128 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.035	27	79	IPR017930	Myb domain
SuperFamily	SSF46689	4.97E-31	30	126	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-15	31	81	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-16	32	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-23	33	86	IPR009057	Homeodomain-like
CDD	cd00167	1.44E-10	34	79	No hit	No description
PROSITE profile	PS51294	24.451	80	134	IPR017930	Myb domain
SMART	SM00717	3.3E-16	84	132	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	85	128	IPR001005	SANT/Myb domain
CDD	cd00167	1.88E-11	87	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-25	87	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MVLQRSNGMA CRPGPTTLPP AQEQEAEAEL RRGPWTVDED LTLINYIAEH GEGRWNTLAR 60 AAGLKRTGKS CRLRWLNYLR PDVKRGNFTA EEQLLILDLH SRWGNRWSKI AQHLPGRTDN 120 EIKNYWRTRV QKHAKQLSCD VNSQRFKDAM KYLWMPRLVE RIQASAAAAA AGNDASCVSG 180 VTMATAGCLE NSPGMVTSSS SCSFTSESLE EKSLHVLGGE ETNCGEWMQE ADHEFWSMAI 240 QPNDQLQDQE LNGWVQGFSE GISENLWSLD DIWKMQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-26	29	132	24	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000515G0560

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009018	1e-135	BT009018.1 Triticum aestivum clone wdk3c.pk006.n12:fis, full insert mRNA sequence.
GenBank	KJ728414	1e-135	KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006663109.1	1e-138	PREDICTED: transcription factor MYB108-like
Refseq	XP_015618000.1	1e-138	transcription factor JAMYB
Swissprot	Q2QZJ8	1e-139	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	A0A0E0RC24	1e-136	A0A0E0RC24_ORYRU; Uncharacterized protein
TrEMBL	J3NA96	1e-136	J3NA96_ORYBR; Uncharacterized protein
STRING	ORUFI11G24630.1	1e-137	(Oryza rufipogon)
STRING	OS11T0684000-01	1e-137	(Oryza sativa)
STRING	OB11G27320.1	1e-137	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	4e-79	myb domain protein 112

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]