PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000513G0590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 310aa MW: 33145 Da PI: 5.151 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.7 | 4.3e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+ll+ p++ r+++++sl+yeA+ r+ +P+y++vg+++++q+q +q PH01000513G0590 4 SCNGCRVLRKGCSEGCTIRPCLqwiktPDAQANATVFLAKFYGRAGLLNLLAGPPDHLRPAVFRSLLYEACGRIVNPIYSSVGLLWSGQWQACQ 97 6****************************************************99*************************************** PP DUF260 90 lkaelallk 98 +++e++l + PH01000513G0590 98 AAVEAVLKG 106 ***998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.114 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-23 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PDAQANATVF LAKFYGRAGL LNLLAGPPDH 60 LRPAVFRSLL YEACGRIVNP IYSSVGLLWS GQWQACQAAV EAVLKGDRIV QVSSEAAAAA 120 QATPPLRAYD IRHVAKDPDA AAAADLLRVA RGGRTRFKRA SSSTSKPKGA GAKRASPTPR 180 QESEPEPEPV VVGEHDDDHD RARSHEESAG SHDHGHVVDD DMEVEEAREE GSEDTEVEAG 240 SHVSQAEQSP GPVAEEEEGE DEVGLELTLG LEPVTRVSRP ARPAAKAPCD LSAESSHIGL 300 RLELPACPSL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000513G0590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP095439 | 0.0 | FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310953.1 | 1e-142 | LOB domain-containing protein 42-like | ||||
Swissprot | Q9M886 | 3e-81 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | I1IL92 | 1e-141 | I1IL92_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G16740.1 | 1e-142 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-71 | LOB domain-containing protein 41 |