PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000496G0570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 207aa MW: 23202.8 Da PI: 5.0363 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 24 | 77 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ PH01000496G0570 24 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 77 458**************8899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.3 | 2.4e-39 | 22 | 115 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+++l++ PH01000496G0570 22 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDYAALRAQYDALHARVESLKQEKLTLATQLED 115 69*****************9999******************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.42E-17 | 15 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 18 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-17 | 21 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.65E-16 | 23 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-19 | 24 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-15 | 24 | 77 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.5E-7 | 50 | 59 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-7 | 59 | 75 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.4E-13 | 79 | 120 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MESDCQFLMV PPQLHQGAGG GERKRRFTEE QVRSLETTFH ARRAKLEPRE KAELARELGL 60 QPRQVAIWFQ NKRARWRSKQ LEQDYAALRA QYDALHARVE SLKQEKLTLA TQLEDVRAKL 120 NERQDQSGGC GGAEGDDKRN NVSSCLVEDN KGAAPVVDVS EDSAADGYEY DHLAYGGGLP 180 EPFCATPELW ETWPLVEWNA VACQST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000496G0570 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152926.1 | 1e-103 | homeobox-leucine zipper protein HOX24-like | ||||
Refseq | XP_020173935.1 | 1e-103 | homeobox-leucine zipper protein HOX24-like | ||||
Swissprot | A2X7U1 | 3e-92 | HOX24_ORYSI; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | A0A3B6QFX1 | 1e-101 | A0A3B6QFX1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453P6J1 | 1e-101 | A0A453P6J1_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QQN6 | 1e-101 | N1QQN6_AEGTA; Homeobox-leucine zipper protein HOX24 | ||||
STRING | EMT01676 | 1e-102 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-34 | homeobox 7 |