PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000493G0150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28139.5 Da PI: 5.1983 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 122 | 170 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a++ a+++++g PH01000493G0150 122 YRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDCAALEFRG 170 9*******.**********82....48*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.422 | 121 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-36 | 121 | 184 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-32 | 121 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 121 | 178 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.18E-32 | 122 | 179 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-14 | 122 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MPTAKQDLKT QFDGHGGQAS SSADANTVME FAGRLISSEQ EHAFIVAVLR HVVSGYSTAP 60 PEIVTVACEE VCLCGIDGCL GCDNFGVGGG AEMVQAANYG VEQMAAATAG GQRRRRRKKN 120 MYRGVRQRPW GKWAAEIRDP RRAVRKWLGT FDTAEEAARA YDCAALEFRG PRAKLNFPNY 180 EPLPGHQNGN GGDVVTVAKT ETLTPSPCSV DAEERTRGER QLGVDELDDQ LWQGLQDLMK 240 LDEWDLWFAP FSGAASSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 118 | 178 | 2 | 63 | ATERF1 |
3gcc_A | 3e-20 | 118 | 178 | 2 | 63 | ATERF1 |
5wx9_A | 4e-20 | 122 | 179 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | RRRRRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000493G0150 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727527 | 5e-72 | KJ727527.1 Zea mays clone pUT5387 AP2-EREBP transcription factor (EREB172) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611044.2 | 2e-91 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | F2DUB2 | 1e-95 | F2DUB2_HORVV; Predicted protein | ||||
STRING | OPUNC09G11150.1 | 3e-95 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 7e-22 | ERF family protein |