PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000491G0390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 436aa    MW: 48646.3 Da    PI: 9.419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000491G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1102.8e-34832291128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                      lp+G++F+Ptd+el+ ++L++kv++        ++++ + i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+         
  PH01000491G0390  83 LPAGVKFDPTDQELI-QHLEAKVKEGGsrahplIDEFIFtIQGEdGICYTHPEKLP-GVTRNGLSKHFFHRPSKAYPTGTRKRRKiqtecdltn 174
                      799************.99******9996676664444445887757**********.455556789******************8788888877 PP

              NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++  g+++g+kk+Lv+y  +g+++k+ekt+Wv+h+y+l
  PH01000491G0390 175 sknGGETRWHKTGKTRPVMV-AGRQKGCKKILVLYnnSGKHRKPEKTNWVIHQYHL 229
                      65433678************.9999**********776899999**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0020201929IPR018527Rubredoxin, iron-binding site
SuperFamilySSF1019412.09E-3575248IPR003441NAC domain
PROSITE profilePS5100531.71483248IPR003441NAC domain
PfamPF023658.1E-1584229IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MNRDHPGSMI VTKLEEHRIS ASWRCPSCGH ELDCKPVCII LHIHAKPCNS FLGCNTKFDL  60
SSDTHILGCM SCGCRCKKDM AGLPAGVKFD PTDQELIQHL EAKVKEGGSR AHPLIDEFIF  120
TIQGEDGICY THPEKLPGVT RNGLSKHFFH RPSKAYPTGT RKRRKIQTEC DLTNSKNGGE  180
TRWHKTGKTR PVMVAGRQKG CKKILVLYNN SGKHRKPEKT NWVIHQYHLG DLEEEEEGEL  240
IVSKVFYQTQ PRQSAAVAVA ATVDQRARAG DTVAEKPGEI QHGRGYAVAA AAAVEVQREQ  300
HQRLKQADGQ FSSARPKKRL HEVGVDHQVK VDQGGEQHDH HHTPSQRRVS PNLHAMLVPA  360
TRSLTGKPPN QMNNEKEGQQ QKFGHRSAGL EELIMPCQSA STKGIKDQPF TFLQFQGPKT  420
NVKTRPYFDF MTTSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-12732292140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000491G0390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688172.11e-127PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688173.11e-127PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688174.11e-127PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688175.11e-127PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688176.11e-127PREDICTED: protein ATAF2 isoform X1
RefseqXP_015688177.11e-127PREDICTED: protein ATAF2 isoform X1
SwissprotQ9M0F81e-103NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A453E6491e-124A0A453E649_AEGTS; Uncharacterized protein
STRINGOB01G15780.11e-124(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.18e-98NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]