PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000491G0390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 436aa MW: 48646.3 Da PI: 9.419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110 | 2.8e-34 | 83 | 229 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 lp+G++F+Ptd+el+ ++L++kv++ ++++ + i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ PH01000491G0390 83 LPAGVKFDPTDQELI-QHLEAKVKEGGsrahplIDEFIFtIQGEdGICYTHPEKLP-GVTRNGLSKHFFHRPSKAYPTGTRKRRKiqtecdltn 174 799************.99******9996676664444445887757**********.455556789******************8788888877 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ g+++g+kk+Lv+y +g+++k+ekt+Wv+h+y+l PH01000491G0390 175 sknGGETRWHKTGKTRPVMV-AGRQKGCKKILVLYnnSGKHRKPEKTNWVIHQYHL 229 65433678************.9999**********776899999**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00202 | 0 | 19 | 29 | IPR018527 | Rubredoxin, iron-binding site |
SuperFamily | SSF101941 | 2.09E-35 | 75 | 248 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.714 | 83 | 248 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-15 | 84 | 229 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MNRDHPGSMI VTKLEEHRIS ASWRCPSCGH ELDCKPVCII LHIHAKPCNS FLGCNTKFDL 60 SSDTHILGCM SCGCRCKKDM AGLPAGVKFD PTDQELIQHL EAKVKEGGSR AHPLIDEFIF 120 TIQGEDGICY THPEKLPGVT RNGLSKHFFH RPSKAYPTGT RKRRKIQTEC DLTNSKNGGE 180 TRWHKTGKTR PVMVAGRQKG CKKILVLYNN SGKHRKPEKT NWVIHQYHLG DLEEEEEGEL 240 IVSKVFYQTQ PRQSAAVAVA ATVDQRARAG DTVAEKPGEI QHGRGYAVAA AAAVEVQREQ 300 HQRLKQADGQ FSSARPKKRL HEVGVDHQVK VDQGGEQHDH HHTPSQRRVS PNLHAMLVPA 360 TRSLTGKPPN QMNNEKEGQQ QKFGHRSAGL EELIMPCQSA STKGIKDQPF TFLQFQGPKT 420 NVKTRPYFDF MTTSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-12 | 73 | 229 | 2 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000491G0390 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688172.1 | 1e-127 | PREDICTED: protein ATAF2 isoform X1 | ||||
Refseq | XP_015688173.1 | 1e-127 | PREDICTED: protein ATAF2 isoform X1 | ||||
Refseq | XP_015688174.1 | 1e-127 | PREDICTED: protein ATAF2 isoform X1 | ||||
Refseq | XP_015688175.1 | 1e-127 | PREDICTED: protein ATAF2 isoform X1 | ||||
Refseq | XP_015688176.1 | 1e-127 | PREDICTED: protein ATAF2 isoform X1 | ||||
Refseq | XP_015688177.1 | 1e-127 | PREDICTED: protein ATAF2 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-103 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A453E649 | 1e-124 | A0A453E649_AEGTS; Uncharacterized protein | ||||
STRING | OB01G15780.1 | 1e-124 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 8e-98 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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