PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000468G1050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 221aa MW: 22734.4 Da PI: 6.0846 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.7 | 2.2e-20 | 100 | 134 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ PH01000468G1050 100 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 134 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.4E-19 | 94 | 151 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.035 | 94 | 130 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-14 | 96 | 135 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.8E-17 | 99 | 134 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.35E-14 | 99 | 131 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 100 | 125 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.7E-18 | 100 | 134 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGSCGGG CSLLFAAAPG DHHHYKQCGD EEAGGFDGSA YGGSVDCTLS 60 LGTPSTRRAE AGARVPAAVA GLPWEAVPSC NGRTDQANAC ANCDTTSTPL WRNGPRGPKS 120 LCNACGIRYK KEERRAAAAA VAPTALPSDS GVEYAYGYAR QQQQQWGCYG SAVAKAASFG 180 MFSDAAAEDG PCLPWGLGVM PSASPAFGAV REMPSLFQYY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000468G1050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003284 | 6e-96 | AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01. | |||
GenBank | AP014957 | 6e-96 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 6e-96 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184096.1 | 1e-113 | GATA transcription factor 20-like | ||||
TrEMBL | A0A3B6GXH2 | 1e-112 | A0A3B6GXH2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453F676 | 1e-112 | A0A453F676_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_5372.1 | 1e-111 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 4e-24 | GATA transcription factor 19 |