PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000459G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 326aa    MW: 34492.5 Da    PI: 5.1231
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000459G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.1e-082057438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     r C++++   ++l+C+ ++ +lC+ C   +H g    H 
  PH01000459G0310 20 RPCDTCGVDAARLYCRADGAFLCPGCDARTH-GagsrHA 57
                     68*****999*********************.4466675 PP
2zf-B_box231.7e-0759103341
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  PH01000459G0310  59 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 103
                      679*****************************6688888898877 PP
3CCT70.25.1e-24250293144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++
  PH01000459G0310 250 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFTKRT 293
                      9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.2E-61761IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2671761IPR000315B-box-type zinc finger
PfamPF006433.0E-52056IPR000315B-box-type zinc finger
CDDcd000215.91E-72061No hitNo description
PROSITE profilePS5011910.42457104IPR000315B-box-type zinc finger
PfamPF006437.7E-659104IPR000315B-box-type zinc finger
SMARTSM003364.6E-962104IPR000315B-box-type zinc finger
PfamPF062033.8E-18250292IPR010402CCT domain
PROSITE profilePS5101716.767250292IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDAEDRKPVA GAGCWGLGAR PCDTCGVDAA RLYCRADGAF LCPGCDARTH GAGSRHARVW  60
LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFLGA LADAPQPFPS  120
SAFAAAVAAT EAQEDADDDG SNEAEAASWL LPEPDKGHED SAAADAFFAD SDAYLGLDLD  180
FARSMDGIKA IGVLAAQPEL DLAAGNLFYP EHSMNHSVSS SEVAVVPDAL SAGAAPAPSL  240
AVVASKGKER EARLMRYREK RKNRRFDKTI RYASRKAYAE TRPRIKGRFT KRTTEDDALL  300
EHDRACSPAM SALVASDGDY GVVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000459G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951310.0FP095131.1 Phyllostachys edulis cDNA clone: bphylf034p18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194140.11e-161zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A3Q8AVT10.0A0A3Q8AVT1_9POAL; Constans-like protein
STRINGEMT222811e-159(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.15e-46CONSTANS-like 3