PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000456G0940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 355aa    MW: 38301.9 Da    PI: 6.5252
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000456G0940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31229284156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv++Lt+++vkSHLQkYRl+
  PH01000456G0940 229 KARRCWSPELHRKFVAALQQLGGPQVATPKQIRELMKVDSLTNDEVKSHLQKYRLH 284
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.866226286IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-28227287IPR009057Homeodomain-like
SuperFamilySSF466899.85E-17227287IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-26229284IPR006447Myb domain, plants
PfamPF002499.1E-7231282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGLDVAEIGL GTDLSLDLKM FASRSVGRVK DAPASAMDDC IRRLEEERGK IEVFRRELPL  60
CARLLADVID VMKEEAEKKK VHREEEDKED GDAGDKSKWM STAQLWTGDS GRDDADSEKQ  120
DKERSSSEAN SHGGGGFVPF KAVGSGAPAF APPCFRKYDK ANDVGMPDLS LLSPAPIKST  180
PAATTGAADE SRRQVVGFAQ AAARTAAMAP SSPNLNLQTQ SQQQQQARKA RRCWSPELHR  240
KFVAALQQLG GPQVATPKQI RELMKVDSLT NDEVKSHLQK YRLHNQRAPS SAVVGQPILF  300
VNPAGLWIPP EQSSSQSGSP QGPLHFSTSG IAVSSAATVS CEDEDGRSES YGWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13229287260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13229287260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000456G0940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804519.11e-164transcription factor NIGTH1-like
TrEMBLA0A0A9H2111e-168A0A0A9H211_ARUDO; Uncharacterized protein
STRINGPavir.Ba02240.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-46G2-like family protein