PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000456G0310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HSF | ||||||||
Protein Properties | Length: 150aa MW: 16797.6 Da PI: 4.6247 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 80.1 | 3.5e-25 | 13 | 73 | 2 | 62 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgF 62 Fl+k+y++++d+ +++++sw e++++fvv+ + efa ++Lp+yFkh+nf+SFvRQLn+Y+ PH01000456G0310 13 FLTKTYQLVDDPCTDHVVSWGEDETTFVVWRPPEFAMDLLPNYFKHNNFSSFVRQLNTYNH 73 9**********************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.0E-27 | 4 | 72 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.3E-24 | 9 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.39E-23 | 12 | 75 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.4E-21 | 13 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-15 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-15 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-15 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MESSHAKPVP APFLTKTYQL VDDPCTDHVV SWGEDETTFV VWRPPEFAMD LLPNYFKHNN 60 FSSFVRQLNT YNHVEPVPPP TPTPPASCRL VELGPAERGA SPRPRQRGDD TAVKLFGVRL 120 NEGKKRRVQL EEEEGDGDHD DDDQGSDQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-15 | 9 | 72 | 26 | 88 | Heat shock factor protein 1 |
5d5v_B | 2e-15 | 9 | 72 | 26 | 88 | Heat shock factor protein 1 |
5d5v_D | 2e-15 | 9 | 72 | 26 | 88 | Heat shock factor protein 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000456G0310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063952 | 1e-68 | AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence. | |||
GenBank | AK099354 | 1e-68 | AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence. | |||
GenBank | AP004671 | 1e-68 | AP004671.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524G08. | |||
GenBank | AP005292 | 1e-68 | AP005292.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1340_C08. | |||
GenBank | AP014963 | 1e-68 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY344494 | 1e-68 | AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds. | |||
GenBank | CP012615 | 1e-68 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 6e-40 | heat shock transcription factor B4 |