PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000445G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 461aa    MW: 48622.4 Da    PI: 7.3219
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000445G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86e-30251309259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ k++++pr+YYrCt+a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  PH01000445G0180 251 SDGCQWRKYGQKMAKSNPYPRAYYRCTMAtACPVRKHVQRCAEDKTILITTYEGTHNHP 309
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-33235311IPR003657WRKY domain
SuperFamilySSF1182903.01E-27243311IPR003657WRKY domain
PROSITE profilePS5081129.011245311IPR003657WRKY domain
SMARTSM007748.9E-35250310IPR003657WRKY domain
PfamPF031061.3E-25252309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVPKQDRYEE EEMVVAEHGH LGFGREIKEV DFFPRGGGGA ATARRGDRDG DGGREEGGQG  60
RGGMVSTALD LLTTARSAVN GGEEKAGAAD DHKKVDAAAM EGELRQAGEE NRRLRRMLEE  120
LTRSYGALYH QLIQATQQQQ HAATDHNPHI HHQTSSTPNS ILPAGMPGLQ FMDPRPSPST  180
RAAFDGGRTN SDDGGADGEA GDAGNKRPIH QEGTATPERG ENGEQAPTEE IMPSRKARVS  240
VRARSEAPMI SDGCQWRKYG QKMAKSNPYP RAYYRCTMAT ACPVRKHVQR CAEDKTILIT  300
TYEGTHNHPL PPAAAAMAPS AAAAMLLSGP TVSREASALF GHHGAAAAAS PLFHPYASAA  360
TTMATLSTSA PFPTITLDLT NSPATGGLLH RPPALPAMPF PMYGFPSHRA PVLPPPVAAA  420
GMVGRQRSAL ETMTAAIASD PNFTTALAAA LSSIMAGGCR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22237313176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000445G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699836.11e-145probable WRKY transcription factor 47
TrEMBLA0A1E5W7H01e-146A0A1E5W7H0_9POAL; WRKY transcription factor 6
STRINGPavir.J02788.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-35WRKY family protein