PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000443G0450
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 297aa    MW: 32230.6 Da    PI: 4.2182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000443G0450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.38.1e-13821191555
              AP2  15 WvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  PH01000443G0450  82 YAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRG 119
                      89*****88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.25365127IPR001471AP2/ERF domain
SMARTSM003807.2E-1777133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-2079128IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-1481127IPR016177DNA-binding domain
PfamPF008472.0E-582119IPR001471AP2/ERF domain
CDDcd000187.64E-2182127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEEEVFMAVK RTEHVEVTSR AVTVATAVGK GKGKGKCGGV EPKTVRVFCD DYDATDSSSD  60
EEAAERRRVK RYVQEIRLQA AYAAEIRDPW RRVRVWLGTF DTAEEAAKVY DSAAIQLRGP  120
DATTNFQQFG DGDVEVPAEV AERLPQPPAR SKNASSSATS YDSGEESHVA AASPTSVLRS  180
FPPFTVASAD NNTSKRPSPP CRATETDKSS NVFGCSFSGN GFAGELPPIY TDFDLLADYP  240
EPPLDFLSDL PEEPFFPGEG SSDLLLDPPS PAGLQQFDDF FQDITDLFQI DPLPVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000443G0450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198992.11e-132ethylene-responsive transcription factor CRF1-like
TrEMBLF2DYN91e-135F2DYN9_HORVV; Predicted protein
STRINGMLOC_58641.11e-136(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-24cytokinin response factor 1