PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000439G0460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 376aa MW: 40949.9 Da PI: 7.0687 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.8 | 7.4e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ PH01000439G0460 11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQElcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103 69****************************.9***************954555552456*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + + +g++ktLvfykgrap+g+k+dW+mheyrl PH01000439G0460 104 IFT-SFKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 ***.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-55 | 7 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.957 | 11 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-28 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQELC 60 RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIFTSFKR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DIHPAAADPG NHPYYSSGSS PMRGVAGDQA AQDEGWVVCR 180 VFKKKNLAAH HGQSSAAAVT SHSTAKLAAA MESSPSNCSS VTVSDHVKAQ MLHSASDDAL 240 DQILQYMGRS CKQETKPAAL DHLTTTTTAC PNSLYGKFMK LPPLEHVTGG GLLPNPAEYS 300 AVDASAIADW DTLDRLAAYE FNGLSDASKN MASFFDEPNA TFSSVHAAGG AGDGDLWSLA 360 RSVSSLHADL TMNNL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-46 | 8 | 188 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-46 | 8 | 188 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-46 | 8 | 188 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-46 | 8 | 188 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-46 | 8 | 188 | 17 | 172 | NAC domain-containing protein 19 |
3swm_B | 7e-46 | 8 | 188 | 17 | 172 | NAC domain-containing protein 19 |
3swm_C | 7e-46 | 8 | 188 | 17 | 172 | NAC domain-containing protein 19 |
3swm_D | 7e-46 | 8 | 188 | 17 | 172 | NAC domain-containing protein 19 |
3swp_A | 7e-46 | 8 | 188 | 17 | 172 | NAC domain-containing protein 19 |
3swp_B | 7e-46 | 8 | 188 | 17 | 172 | NAC domain-containing protein 19 |
3swp_C | 7e-46 | 8 | 188 | 17 | 172 | NAC domain-containing protein 19 |
3swp_D | 7e-46 | 8 | 188 | 17 | 172 | NAC domain-containing protein 19 |
4dul_A | 7e-46 | 8 | 188 | 14 | 169 | NAC domain-containing protein 19 |
4dul_B | 7e-46 | 8 | 188 | 14 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000439G0460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT833124 | 0.0 | CT833124.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA241M20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655752.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-114 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | J3MB03 | 0.0 | J3MB03_ORYBR; Uncharacterized protein | ||||
STRING | OB06G11970.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-103 | NAC family protein |