PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000437G0390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 24914.3 Da PI: 8.3871 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.2 | 1.5e-21 | 102 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +g+WvAeIrdp + r +lg+f+taeeAa+a++ a+++++g PH01000437G0390 102 SKFRGVRQRP-WGKWVAEIRDP-----HraVRKWLGTFDTAEEAARAYDVAALEFRG 152 79********.**********7.....338*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.27E-32 | 102 | 160 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-23 | 102 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-14 | 102 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.014 | 103 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 103 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-37 | 103 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVPRLERAAG FQLPSTEQEN ALFLRALISV VAGDTAVPTL HPESAPPVAT AAAAAAACAR 60 CGVIGCLGCE SFAAAATGSS SEEECSVSWV KGGVGKRRRR GSKFRGVRQR PWGKWVAEIR 120 DPHRAVRKWL GTFDTAEEAA RAYDVAALEF RGQRAKLNFP AAAASASVSS WAVVQSQPLP 180 ESLREKCGSN AVSPVHVPQV PQQGRPMARE QEIWDGLQEI MMLDDGSFWS MP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 100 | 160 | 2 | 63 | ATERF1 |
3gcc_A | 3e-20 | 100 | 160 | 2 | 63 | ATERF1 |
5wx9_A | 6e-20 | 103 | 160 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000437G0390 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374826 | 1e-69 | AK374826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077G12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193084.1 | 2e-97 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A3B6NU93 | 4e-96 | A0A3B6NU93_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6QIA8 | 5e-96 | A0A3B6QIA8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453PMV3 | 5e-96 | A0A453PMV3_AEGTS; Uncharacterized protein | ||||
STRING | OMERI02G31240.1 | 3e-93 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-15 | ethylene response factor 110 |