PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000434G0400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 28112.9 Da PI: 8.0139 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.7e-18 | 105 | 159 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LA++l+L rqV vWFqNrRa+ k PH01000434G0400 105 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRPRQVEVWFQNRRARTK 159 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.9 | 7.6e-40 | 105 | 193 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+ F+e+++L+p++Kv+lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr + PH01000434G0400 105 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCFETLTEENRRLHRELQQLR-A 193 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-18 | 94 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-19 | 97 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.103 | 101 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-15 | 103 | 165 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.04E-15 | 105 | 162 | No hit | No description |
Pfam | PF00046 | 1.9E-15 | 105 | 159 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 136 | 159 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.4E-10 | 161 | 194 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.6E-20 | 161 | 204 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEETIAYIPR QLCMAQEEVG LALGLSLGSG HHQPKEQPPS QPCAVEPSLT LSLPADNGLT 60 APGRPLIAAV KRELRAEDDE EAAERALYSA ASPAAADDDE GCNSRKKLRL TKEQSALLED 120 RFKEHSTLNP KQKVALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCELL KRCFETLTEE 180 NRRLHRELQQ LRALNHPHPA GFFMSQLPAA TLSICPSCER VAGPPPAAAD RPTKAAGPGR 240 AAHFQFSPFT NSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 109 | SRKKLRL |
2 | 153 | 161 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000434G0400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098984 | 0.0 | FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983488.1 | 1e-121 | homeobox-leucine zipper protein HOX15 | ||||
Swissprot | Q7G737 | 6e-85 | HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15 | ||||
TrEMBL | K4AE82 | 1e-120 | K4AE82_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ib02193.1.p | 1e-121 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 9e-61 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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