PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000425G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 469aa    MW: 49518.6 Da    PI: 9.8504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000425G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015234256223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cg+ F  ++ L+ H  + H
  PH01000425G0160 234 SCHRCGEQFGKWDALEAHHLSkH 256
                      7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280235256IPR007087Zinc finger, C2H2
SuperFamilySSF563994.7E-23258467No hitNo description
Gene3DG3DSA:3.90.228.108.0E-10282439IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGERRRRASA VAGGGGRGSE EETKVAAPAP APTVWFALKR SLHCRSAPSE VHVPRPKAGA  60
VAGAGGGGHL SAIVTKRAAR SGCSRSIANI RDVIHGSKRH PERPPSCSPR SIGSSEFLNP  120
IAHEVVLSTN SRCELKITGF GGLAAGGVLA HEAEGHGGIV SSFVGTLRPG TPGPGWSHGL  180
QYNGSCRSVR CTPPRSPNVL LDRDGPPAGV AAGHRASCEV DAVKSGGKSS GGLSCHRCGE  240
QFGKWDALEA HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE RVFKVHNTQR  300
TMSRFEEYRE VVKLKASKLP KKHPRCLADG NELLRFHGVT LTCALGAAGG SGPSICTSHK  360
CAVCRIIRYG FSAKEGKAGV GVFTTSTSGR AFESIETYDD DPATRKALLV CRVIAGRVHK  420
PLDNLKELIG QTGFDSLAGK VGPYSNIEEL YLLNPRALLP CFVVICKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000425G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLQ8LQM00.0Q8LQM0_ORYSJ; Os01g0785900 protein
STRINGOS01T0785900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-151C2H2 family protein