PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000423G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | TCP | ||||||||
Protein Properties | Length: 276aa MW: 29597 Da PI: 7.8511 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.5 | 2.6e-30 | 54 | 143 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...k 89 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++++++ + + ss + +s+ + + PH01000423G0070 54 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAQHEIDKLPPLQFPPQDLVAHMSSPMAPPFSNGAdhaA 143 78*************************************************************999993333333333333333333221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.284 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.1E-27 | 55 | 117 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MISGNHANEE LQASCVRKVD QSAGDGGAFK AMASSRHWSA STESRIVRVS RVFGGKDRHS 60 KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLLNAAQHEI DKLPPLQFPP 120 QDLVAHMSSP MAPPFSNGAD HAAAATTAAA SMLVDGDKAY CNSNLKGFMS LNNSLGLVNS 180 SMPSLAHGSY YTAESWNNGN VHEVSHGASP QVVAHHSPFP SLLSLAPGSQ LVFYSSEGGF 240 AMKEAADQFP VDNLDHSQGQ LSLSSARSFF HSGSQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000423G0070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097614 | 0.0 | FP097614.1 Phyllostachys edulis cDNA clone: bphyem213i07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961521.1 | 1e-125 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_004961522.1 | 1e-125 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_012700333.1 | 1e-125 | transcription factor TCP13 isoform X1 | ||||
TrEMBL | K3Z8G3 | 1e-124 | K3Z8G3_SETIT; Uncharacterized protein | ||||
STRING | Si022830m | 1e-125 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |