PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000420G0650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 194aa MW: 21015.7 Da PI: 4.3592 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.5 | 2.2e-08 | 2 | 18 | 40 | 56 |
-HHHHHHHHHHHHHHHH CS Homeobox 40 terqVkvWFqNrRakek 56 rqV vWFqNrRa++k PH01000420G0650 2 APRQVAVWFQNRRARWK 18 579*************9 PP | |||||||
2 | HD-ZIP_I/II | 75.2 | 1.2e-24 | 1 | 56 | 38 | 93 |
HD-ZIP_I/II 38 lqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ L +++++Lr+++++ PH01000420G0650 1 MAPRQVAVWFQNRRARWKTKQLEQDFDRLKAAYDALAADHQGLLSDNDRLRAQVAS 56 57*************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 1.37E-6 | 1 | 21 | No hit | No description |
PROSITE profile | PS50071 | 10.722 | 1 | 20 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 2 | 27 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.08E-7 | 2 | 28 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-5 | 3 | 18 | IPR001356 | Homeobox domain |
Pfam | PF02183 | 5.2E-16 | 20 | 62 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAPRQVAVWF QNRRARWKTK QLEQDFDRLK AAYDALAADH QGLLSDNDRL RAQVASLTEK 60 LQAKETSPSA TTTVAQEVDQ PDEHTTQQQL KEDLLSSGAT NDGSSSAVVL DVAEGTNHSG 120 ESTYFAGEGY KYNDCAGKHG GGALSSEEED GGAVSDEGCS FHLPAEDAIF AAGVVHHVAE 180 EEAQLGSWTS WFWN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 20 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000420G0650 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092493 | 0.0 | FP092493.1 Phyllostachys edulis cDNA clone: bphyem123k06, full insert sequence. | |||
GenBank | FP097853 | 0.0 | FP097853.1 Phyllostachys edulis cDNA clone: bphyem205k19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235125.1 | 1e-97 | homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q6ZA74 | 4e-74 | HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | I1I717 | 2e-96 | I1I717_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G35850.1 | 4e-97 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-28 | homeobox 1 |
Publications ? help Back to Top | |||
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