PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000411G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 484aa    MW: 52716.3 Da    PI: 7.6994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000411G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05314333120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  PH01000411G0430 314 FSCPVCFKTFNRYNNMQMHM 333
                      89*****************9 PP
2zf-C2H212.30.00052400420323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F  k + ++H +++
  PH01000411G0430 400 CRKCGKAFAVKGDWRTHEKNC 420
                      *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64314341IPR007087Zinc finger, C2H2
SMARTSM003550.38314336IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-6314333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280316336IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-6380418No hitNo description
Gene3DG3DSA:3.30.160.604.1E-5385418IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621398418IPR007087Zinc finger, C2H2
SMARTSM0035582398418IPR015880Zinc finger, C2H2-like
SMARTSM00355220424447IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MPEKRDFTAE RGDSTRRGRT GGGERTNMVA GGLFPSLSCL PYPSHYNYPL PTTAPHLTPR  60
PVAKNRSKAG REYQSKKPSY PSMEDPYTSF FKNPYYYYCA NSFPTPPPTP HFPPPLPPYT  120
ALYPAVAASP LQYRASFFQP PPPHHHHDSA PPSPPLREAL PLLSLSPTPA SRPHDAADSD  180
DEDCYLQEAA VGSTTPARMP LFADLNCMPS CCDNGDPMDL EAGTSATDDA AVALRIGLPA  240
GSGCGGTEAD LLSGISGRGA GIETDGEEEE CKVGGGSGDE VVLLGFPSTP IGKLNKGQYW  300
IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV QPTAMLRLPC  360
YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGLKPFLC RKCGKAFAVK GDWRTHEKNC  420
GKLWYCLCGS EFKHKRSLKD HARAFGHGHG AFGCNGADGF DDDDEGAVSE IEQDCEGARS  480
SLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000411G0430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821697.10.0zinc finger protein WIP2-like
TrEMBLA0A1E5V5R30.0A0A1E5V5R3_9POAL; Zinc finger protein WIP2
STRINGPavir.Fa00506.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein