PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000407G0480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 26986.7 Da PI: 9.0569 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 83 | 137 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q ++Lee+F+ +++++ +++ LA++l+L rqV vWFqNrRa+ k PH01000407G0480 83 RKKLRLSKDQATVLEECFKTHHTLTPKQKLALANSLNLRPRQVEVWFQNRRARTK 137 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.9 | 7.5e-40 | 83 | 173 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l een+rLekev+eLr +lk PH01000407G0480 83 RKKLRLSKDQATVLEECFKTHHTLTPKQKLALANSLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLGEENRRLEKEVAELR-ALK 173 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 54 | 140 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-18 | 71 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 79 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.3E-16 | 81 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.32E-15 | 83 | 140 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 83 | 137 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.0E-21 | 139 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.2E-10 | 139 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAPQRLDLGL SLGLGLGLAS QPQPSFCLIS GNVAAADQEV SPAAAEERTC SPGSPVSSGS 60 GKRSERSAGS GDEDDAGCDG NARKKLRLSK DQATVLEECF KTHHTLTPKQ KLALANSLNL 120 RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR WCEQLGEENR RLEKEVAELR ALKAVAPAGA 180 AAPLTTLTIC LSCKRVASSS CPTANAANLF AAANAGMPSP VLMPGHRQFF CGFRETGATY 240 GSSSGLAKAV KAAR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000407G0480 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812705.1 | 3e-90 | homeobox-leucine zipper protein HOX28-like | ||||
Swissprot | A2Y931 | 1e-73 | HOX28_ORYSI; Homeobox-leucine zipper protein HOX28 | ||||
Swissprot | Q5VPE5 | 1e-73 | HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28 | ||||
TrEMBL | A0A3B6RCL6 | 1e-100 | A0A3B6RCL6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446X0G4 | 1e-100 | A0A446X0G4_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_822582A19.1 | 1e-99 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-51 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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