PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000403G0250

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

LBD

Protein Properties

Length: 288aa MW: 30256.4 Da PI: 8.8995

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000403G0250	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	32.6	2.3e-10	114	189	26	98
DUF260 26 qpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++++fa v l+ +n + l++ + + r ++++sl+yeA r+ + v+Gavg++++++++l+q+++e++l++ PH01000403G0250 114 RSSDFALVLLLHTSQNQKQSLANYvsvDWDARAALFQSLLYEAAGRTINQVHGAVGLLWTGNWHLCQAAVETVLRG 189 5677888888888888888777764446778**************************************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-7	115	186	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MPSSEPAKGV LLCAQTVAGG LRTFLPRLPD DLLRTGSHAC CGLGNITLNQ RQFNTLNDPK 60 FPKHLRVALQ GQWIDAADAQ GHATVFVAKF FGRAGLLSFI SAVPDAQRPG VYNRSSDFAL 120 VLLLHTSQNQ KQSLANYVSV DWDARAALFQ SLLYEAAGRT INQVHGAVGL LWTGNWHLCQ 180 AAVETVLRGG SIGPLPELGG GCGAGGDLYG AAKRTSGWST FSTAKRMRKS DAPALSCDLG 240 LCLSPGSPPA AGQRRAALRP GTPSMSSDES VTTTGGEKEP VLLNLFA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000403G0250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP097640	1e-165	FP097640.1 Phyllostachys edulis cDNA clone: bphyem213i10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650230.1	1e-100	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9SN23	4e-43	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	J3LQ30	1e-100	J3LQ30_ORYBR; Uncharacterized protein
STRING	OB03G31560.1	1e-101	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-41	LOB domain-containing protein 37