PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000399G0890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NF-YB | ||||||||
Protein Properties | Length: 276aa MW: 31471.7 Da PI: 4.7481 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 48.7 | 1.8e-15 | 21 | 81 | 13 | 73 |
NF-YB 13 vsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalat 73 + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al + PH01000399G0890 21 MFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKKTIAPEHVLKALQH 81 578*****************************************************99864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.06E-20 | 19 | 81 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.9E-22 | 20 | 81 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.8E-18 | 22 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.3E-4 | 112 | 173 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MEYSVINRET FGGIIDYNST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE 60 VCSREEKKTI APEHVLKALQ HYVNMLSKIK DMIYILSIFC ELKIKITECL GTDLGFREYI 120 EEVYAAYEQH KLDTLDSPKA SKFTGVEMTE EEAVAEQQRM FAEARARMNN GAAKPKEQEA 180 EPQQPPQPQL QLHPQPQQPL QPQLQLHPQP QQPPQLLLHP QPQQPQQQLH SQPQQPPQLQ 240 LQPQEQAQPQ PQPQPQPLSQ PQPLSQPQTE HGLDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-23 | 19 | 165 | 19 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000399G0890 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT841564 | 8e-68 | CT841564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235094.1 | 8e-93 | nuclear transcription factor Y subunit beta | ||||
Swissprot | P49592 | 3e-58 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | I1I6Q3 | 2e-91 | I1I6Q3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G34930.1 | 3e-92 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-61 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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