PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000392G1070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | TALE | ||||||||
Protein Properties | Length: 127aa MW: 14666.9 Da PI: 10.4682 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31 | 4.4e-10 | 59 | 93 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ PH01000392G1070 59 RWPYPTEEDKVRLAAMTGLNPKQINNWFINQRKRH 93 569*****************************985 PP | |||||||
2 | ELK | 34.8 | 3.5e-12 | 13 | 34 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ PH01000392G1070 13 ELKEMLLKKYSGCLSRLRSEFL 34 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 10.423 | 13 | 33 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 13 | 34 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.1E-9 | 13 | 34 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.665 | 33 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-13 | 35 | 100 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-20 | 35 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 38 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.58E-12 | 45 | 97 | No hit | No description |
Pfam | PF05920 | 5.8E-18 | 53 | 92 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGQEHSSRLA DHELKEMLLK KYSGCLSRLR SEFLKKRKKG KLPKDARTAL LEWWNAHYRW 60 PYPTEEDKVR LAAMTGLNPK QINNWFINQR KRHWKPSEDM RFALMEGVAG GSSGTTLYFD 120 TGTIGP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 37 | LRSEFLKKRK |
2 | 34 | 38 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000392G1070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007626 | 1e-116 | AB007626.1 Oryza sativa Japonica Group HOS16 mRNA, partial cds. | |||
GenBank | AK241312 | 1e-116 | AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967561.1 | 2e-79 | homeobox protein knotted-1-like 1 | ||||
Swissprot | A2Y007 | 5e-76 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 5e-76 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A1E5WIJ8 | 4e-78 | A0A1E5WIJ8_9POAL; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A368R0G5 | 4e-78 | A0A368R0G5_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A3L6SUH9 | 2e-78 | A0A3L6SUH9_PANMI; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | K3XMZ5 | 2e-78 | K3XMZ5_SETIT; Uncharacterized protein | ||||
STRING | Si003268m | 3e-79 | (Setaria italica) | ||||
STRING | Sb03g012480.1 | 8e-79 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 3e-38 | KNOTTED-like from Arabidopsis thaliana |