PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000388G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 306aa    MW: 33947.3 Da    PI: 8.2903
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000388G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.3e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ +++ G+g +W + +++ g++R++k+c++rw++yl
  PH01000388G0380 14 KGPWSPEEDAKLKEFIEKQGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding32.91.5e-1069111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+ Ed  +    +  G++ W+ Ia+ ++ gRt++++k++w++
  PH01000388G0380  69 GEFTEHEDRVICGMYANIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.725966IPR017930Myb domain
SuperFamilySSF466892.34E-2612109IPR009057Homeodomain-like
SMARTSM007172.8E-111364IPR001005SANT/Myb domain
PfamPF002492.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-231569IPR009057Homeodomain-like
CDDcd001671.28E-81662No hitNo description
PROSITE profilePS5129414.90767117IPR017930Myb domain
SMARTSM007172.2E-967115IPR001005SANT/Myb domain
PfamPF002491.5E-869111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRAPCCDKN TVKKGPWSPE EDAKLKEFIE KQGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTEHEDRVIC GMYANIGSRW SIIASQLPGR TDNDIKNYWN TKLKRKLLGS  120
TAGPLPRPPR QHHRPVLLPH SPSLPHHPSP SYNGFFTGAC SPQEPLIATF TLPTTQDYML  180
SSGSLTMTNA SALLHAQGAA HQLQVKEESS SMIVFGSDQQ SCSSSDGTQS QFGRHGKELS  240
FDGYSYGYNG IIEQDHKLFQ QEQAQLDYNY EEIKQLLMTT SAAGLHDQEA MEGLIGSQHG  300
KVTMM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000388G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962050.0FP096205.1 Phyllostachys edulis cDNA clone: bphylf043l07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975125.11e-139transcription factor RAX2
TrEMBLA0A3L6PSV41e-145A0A3L6PSV4_PANMI; Transcription factor RAX2-like
STRINGSi010627m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-73myb domain protein 68