PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000386G0660
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 347aa    MW: 37877.4 Da    PI: 5.028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000386G0660genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  PH01000386G0660 16 KGSWTPEEDMRLITYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                     799*****************************99************97 PP
2Myb_DNA-binding49.31.1e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++ +lG++ W++I ++++ gRt++++k+ w+++l
  PH01000386G0660  69 RGNFTAEEEETIIKLHGLLGNK-WSKITSCLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7591163IPR017930Myb domain
SuperFamilySSF466895.62E-3013110IPR009057Homeodomain-like
SMARTSM007173.3E-131565IPR001005SANT/Myb domain
PfamPF002493.0E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-241770IPR009057Homeodomain-like
CDDcd001676.37E-111863No hitNo description
PROSITE profilePS5129423.16664118IPR017930Myb domain
SMARTSM007172.7E-1368116IPR001005SANT/Myb domain
PfamPF002491.4E-1369114IPR001005SANT/Myb domain
CDDcd001675.98E-1071114No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2571117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDMRLITY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IKLHGLLGNK WSKITSCLPG RTDNEIKNVW NTHLKKRVAP  120
SAGERKKDGA KSKKKTTRVD VTVRSPSPSS STTTTNCSSG DSGGQSNTSN EELDKIEIPM  180
LDPGFDFDML VDPVPDTYYP ALSLPTSPCS STSPPCVRGV DELLDLPEID IEPELWNIIY  240
SDTGGGACTE TTPAPCHGNA SESSAATASQ EEGKEWWLDL ENLERELGLW GPMDDYQYHP  300
GPQGQPGRVD LLSATVEDPV SCYFQAGPTS QGHESSAALT SNQMDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-281411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000386G0660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119601e-159AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185012.11e-164myb-related protein Zm1-like
SwissprotP200241e-112MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A453CWE91e-163A0A453CWE9_AEGTS; Uncharacterized protein
STRINGOB04G30570.11e-160(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-70myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]